RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 C4orf51C9J302 202 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 MYO1DO94832 1006 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 SNRPB2P08579 225 aaKnown RBP16.67■□□□□ 0.26
PCF11-206ENST00000533018 SMIM10L1P0DMW3 83 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 ABOP16442 354 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 SLBPQ14493 270 aaKnown RBP eCLIP16.67■□□□□ 0.26
PCF11-206ENST00000533018 TMIGD1Q6UXZ0 262 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 SPPL2CQ8IUH8 684 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 MCEMP1Q8IX19 187 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 KRT78Q8N1N4 520 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 SPATA6LQ8N4H0 392 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 TTLQ8NG68 377 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 PYROXD1Q8WU10 500 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 RHBDF1Q96CC6 855 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 SMIM10Q96HG1 83 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 FRMD6Q96NE9 622 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 RHOJQ9H4E5 214 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 CAB39LQ9H9S4 337 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 CHST11Q9NPF2 352 aa16.67■□□□□ 0.26
PCF11-206ENST00000533018 PNO1Q9NRX1 252 aaKnown RBP16.67■□□□□ 0.26
PCF11-206ENST00000533018 TRBV11-1A0A0K0K1C0 115 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 ANKDD1BA6NHY2 528 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 ERI3O43414 337 aaKnown RBP16.66■□□□□ 0.26
PCF11-206ENST00000533018 ASNA1O43681 348 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 NME2P1O60361 137 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 ZNF24P17028 368 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 NME2P22392 152 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 RPL21P46778 160 aaKnown RBP16.66■□□□□ 0.26
PCF11-206ENST00000533018 CLCN2P51788 898 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 SMSP52788 366 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 MLF1P58340 268 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 MRPS25P82663 173 aaKnown RBP16.66■□□□□ 0.26
PCF11-206ENST00000533018 SLC13A2Q13183 592 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 XKRXQ6PP77 449 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 BNC2Q6ZN30 1099 aaPredicted RBP16.66■□□□□ 0.26
PCF11-206ENST00000533018 SLCO4C1Q6ZQN7 724 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 KLHDC8AQ8IYD2 350 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 CPSF7Q8N684 471 aaKnown RBP16.66■□□□□ 0.26
PCF11-206ENST00000533018 BBOF1Q8ND07 529 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 CDKL2Q92772 493 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 GAL3ST3Q96A11 431 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 PDLIM2Q96JY6 352 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 AICDAQ9GZX7 198 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 POPDC3Q9HBV1 291 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 WWOXQ9NZC7 414 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 FBXW2Q9UKT8 454 aa16.66■□□□□ 0.26
PCF11-206ENST00000533018 MTO1Q9Y2Z2 717 aaKnown RBP16.66■□□□□ 0.26
PCF11-206ENST00000533018 A0A088AWK7 358 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 IGKV3D-11A0A0A0MRZ8 115 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 E7ESA3 106 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 CLDN4O14493 209 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 CDK2AP1O14519 115 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 CLGNO14967 610 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 TP73O15350 636 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 ZNHIT1O43257 154 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 B3GALT2O43825 422 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 CCDC166P0CW27 439 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 ZNF10P21506 573 aaPredicted RBP16.65■□□□□ 0.26
PCF11-206ENST00000533018 SLC6A12P48065 614 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 HLCSP50747 726 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 PLA2G16P53816 162 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 HSF1Q00613 529 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 POU4F1Q01851 419 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 CALCOCO2Q13137 446 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 RUNX2Q13950 521 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 TGFBIQ15582 683 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 FBXO48Q5FWF7 155 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 GHDCQ8N2G8 530 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 TMEM156Q8N614 296 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 SNX31Q8N9S9 440 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 NFAM1Q8NET5 270 aaPredicted RBP16.65■□□□□ 0.26
PCF11-206ENST00000533018 TSPAN17Q96FV3 270 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 CCDC77Q9BR77 488 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 CAPS2Q9BXY5 557 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 CNOT10Q9H9A5 744 aaKnown RBP16.65■□□□□ 0.26
PCF11-206ENST00000533018 SAYSD1Q9NPB0 183 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 PRTFDC1Q9NRG1 225 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 MRPS33Q9Y291 106 aaKnown RBP16.65■□□□□ 0.26
PCF11-206ENST00000533018 MMACHCQ9Y4U1 282 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 TACC2O95359 2948 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 DCHS2Q6V1P9 2916 aa16.65■□□□□ 0.26
PCF11-206ENST00000533018 LRIT2A6NDA9 550 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 COX6B1P14854 86 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 SSTR1P30872 391 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 HNRNPH1P31943 449 aaKnown RBP16.64■□□□□ 0.25
PCF11-206ENST00000533018 HPDP32754 393 aaPredicted RBP16.64■□□□□ 0.25
PCF11-206ENST00000533018 ADORA2A-AS1P86434 159 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 TRIM40Q6P9F5 258 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 GPSM1Q86YR5 675 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 TCAIMQ8N3R3 496 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 FAM47BQ8NA70 645 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 B3GNT7Q8NFL0 401 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 MS4A6EQ96DS6 147 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 NPLQ9BXD5 320 aaPredicted RBP16.64■□□□□ 0.25
PCF11-206ENST00000533018 DERL2Q9GZP9 239 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 REXO4Q9GZR2 422 aaKnown RBP16.64■□□□□ 0.25
PCF11-206ENST00000533018 DPH5Q9H2P9 285 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 COPS7BQ9H9Q2 264 aaPredicted RBP16.64■□□□□ 0.25
PCF11-206ENST00000533018 SMYD2Q9NRG4 433 aa16.64■□□□□ 0.25
PCF11-206ENST00000533018 DNAJC11Q9NVH1 559 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms