RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ATP6V1HQ9UI12 483 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 PADI4Q9UM07 663 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 MAN2B2Q9Y2E5 1009 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 AP3M1Q9Y2T2 418 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 PCNX2A6NKB5 2137 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 A8MUI8 341 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 PDE5AO76074 875 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 SERPIND1P05546 499 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 SLC6A2P23975 617 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 ACP1P24666 158 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 TPP2P29144 1249 aaPredicted RBP20.19■□□□□ 0.82
VPS28-212ENST00000530836 ID4P47928 161 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 DAB2P98082 770 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 UGT8Q16880 541 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 CPTPQ5TA50 214 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 ANXA8L1Q5VT79 327 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 OR4C11Q6IEV9 310 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 NT5CQ8TCD5 201 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 KCNC2Q96PR1 638 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 ZNF717Q9BY31 904 aaPredicted RBP20.19■□□□□ 0.82
VPS28-212ENST00000530836 SEMA6CQ9H3T2 930 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 POMPQ9Y244 141 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 L3MBTL1Q9Y468 752 aa20.19■□□□□ 0.82
VPS28-212ENST00000530836 SPAARA0A1B0GVQ0 90 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 EME2A4GXA9 379 aaPredicted RBP20.18■□□□□ 0.82
VPS28-212ENST00000530836 URADA6NGE7 173 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 RHPN2P1A8MT19 583 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 AKAP10O43572 662 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 NUDT21O43809 227 aaKnown RBP20.18■□□□□ 0.82
VPS28-212ENST00000530836 DNAJA2O60884 412 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 PROS1P07225 676 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 SLC35G6P0C7Q6 338 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 CAPZBP47756 277 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 SLC7A2P52569 658 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 MAPK12P53778 367 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 CEACAM7Q14002 265 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 KPNB1Q14974 876 aaKnown RBP20.18■□□□□ 0.82
VPS28-212ENST00000530836 MANEAQ5SRI9 462 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 FBXW10Q5XX13 1052 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 FCRL6Q6DN72 434 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 FBXO42Q6P3S6 717 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 TRIM40Q6P9F5 258 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 DLEU7Q6UYE1 221 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 ASPGQ86U10 573 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 TRIM73Q86UV7 250 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 NATD1Q8N6N6 113 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 ZNF655Q8N720 491 aaPredicted RBP20.18■□□□□ 0.82
VPS28-212ENST00000530836 OR2L5Q8NG80 312 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 OR8J3Q8NGG0 315 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 CDC26Q8NHZ8 85 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 JADE3Q92613 823 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 GFM2Q969S9 779 aaKnown RBP20.18■□□□□ 0.82
VPS28-212ENST00000530836 COQ8BQ96D53 544 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 ZFYVE21Q9BQ24 234 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 TBCDQ9BTW9 1192 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 SLC6A16Q9GZN6 736 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 RAB33BQ9H082 229 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 SUCOQ9UBS9 1254 aaKnown RBP20.18■□□□□ 0.82
VPS28-212ENST00000530836 PILRAQ9UKJ1 303 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 KLHL20Q9Y2M5 609 aa20.18■□□□□ 0.82
VPS28-212ENST00000530836 TYRP1P17643 537 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 HNRNPH1P31943 449 aaKnown RBP20.17■□□□□ 0.82
VPS28-212ENST00000530836 TRPC1P48995 793 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 TAS2R50P59544 299 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 SIM1P81133 766 aaPredicted RBP20.17■□□□□ 0.82
VPS28-212ENST00000530836 HEPACAMQ14CZ8 416 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 C6orf10Q5SRN2 563 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 FAM71E1Q6IPT2 247 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 RIPOR1Q6ZS17 1223 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 SLC15A3Q8IY34 581 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 CAMKVQ8NCB2 501 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 OR6C4Q8NGE1 309 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 WDR60Q8WVS4 1066 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 RSC1A1Q92681 617 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 STMN2Q93045 179 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 MS4A6EQ96DS6 147 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 ASB9Q96DX5 294 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 TM4SF19Q96DZ7 209 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 OR2A5Q96R48 311 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 CGREF1Q99674 301 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 BHLHE41Q9C0J9 482 aaPredicted RBP20.17■□□□□ 0.82
VPS28-212ENST00000530836 ROGDIQ9GZN7 287 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 ABCG4Q9H172 646 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 TOR4AQ9NXH8 423 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 CD300AQ9UGN4 299 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 PCDHA9Q9Y5H5 950 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 COL5A1P20908 1838 aaPredicted RBP20.17■□□□□ 0.82
VPS28-212ENST00000530836 CNOT1A5YKK6 2376 aaKnown RBP20.17■□□□□ 0.82
VPS28-212ENST00000530836 SPTBN4Q9H254 2564 aa20.17■□□□□ 0.82
VPS28-212ENST00000530836 A0A096LPI6 279 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 CPED1A4D0V7 1026 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 GABRR3A8MPY1 467 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 GUCY1B2O75343 617 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 ATP6V1G2O95670 118 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 GLB1P16278 677 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 SSR2P43308 183 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 CYP4F3Q08477 520 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 C2orf80Q0P641 193 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 HYAL2Q12891 473 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 TRAP1Q12931 704 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms