RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FAM60AQ9NP50 221 aa20■□□□□ 0.79
VPS28-208ENST00000527797 ATAD3AQ9NVI7 634 aa20■□□□□ 0.79
VPS28-208ENST00000527797 SH3BP4Q9P0V3 963 aa20■□□□□ 0.79
VPS28-208ENST00000527797 SLAMF8Q9P0V8 285 aa20■□□□□ 0.79
VPS28-208ENST00000527797 MAN2B2Q9Y2E5 1009 aa20■□□□□ 0.79
VPS28-208ENST00000527797 VCANP13611 3396 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 C4orf51C9J302 202 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 P2RX6O15547 441 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 SH3BP5O60239 455 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 FURINP09958 794 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 ZNF888P0CJ79 500 aaPredicted RBP19.99■□□□□ 0.79
VPS28-208ENST00000527797 ENGP17813 658 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 MC1RQ01726 317 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 KLC1Q07866 573 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 PDE7AQ13946 482 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 HEPACAMQ14CZ8 416 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 PIGGQ5H8A4 983 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 C6orf163Q5TEZ5 329 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 ANXA8L1Q5VT79 327 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 ANKRD26P1Q6NSI1 321 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 HPS6Q86YV9 775 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 MCATQ8IVS2 390 aaKnown RBP19.99■□□□□ 0.79
VPS28-208ENST00000527797 CARFQ8N187 725 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 ZCCHC7Q8N3Z6 543 aaKnown RBP19.99■□□□□ 0.79
VPS28-208ENST00000527797 DNAJC22Q8N4W6 341 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 AMER3Q8N944 861 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 ACOT4Q8N9L9 421 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 VPS37AQ8NEZ2 397 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 OR8K5Q8NH50 307 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 UTP15Q8TED0 518 aaKnown RBP19.99■□□□□ 0.79
VPS28-208ENST00000527797 SMOC1Q9H4F8 434 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 COPS7BQ9H9Q2 264 aaPredicted RBP19.99■□□□□ 0.79
VPS28-208ENST00000527797 TMEM181Q9P2C4 612 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 BTBD3Q9Y2F9 522 aa19.99■□□□□ 0.79
VPS28-208ENST00000527797 C15orf38-AP3S2A0A0A6YYH1 394 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 CPED1A4D0V7 1026 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 MAP3K7O43318 606 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 GUCY1B2O75343 617 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 FAM58BPP0C7Q3 252 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SLC6A2P23975 617 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 CD1CP29017 333 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SLC7A2P52569 658 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 ATXN3P54252 364 aaPredicted RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 VSX2P58304 361 aaPredicted RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 BTN3A2P78410 334 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SLAMF1Q13291 335 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 CEACAM7Q14002 265 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SUZ12Q15022 739 aaKnown RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 ABHD13Q7L211 337 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SPRED1Q7Z699 444 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 ARPINQ7Z6K5 226 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 CSNK1A1LQ8N752 337 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 DNAJB14Q8TBM8 379 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 CGREF1Q99674 301 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 BHLHE41Q9C0J9 482 aaPredicted RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 MIEF1Q9NQG6 463 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 KLHL3Q9UH77 587 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 PACSIN3Q9UKS6 424 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 CACNA1EQ15878 2313 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 LY6G6EA0A0G2JKS1 128 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 A8MUI8 341 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 PRR33A8MZF0 331 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SRPX2O60687 465 aaPredicted RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 ERN1O75460 977 aaKnown RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 RASSF9O75901 435 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 DDX5P17844 614 aaKnown RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 DDCP20711 480 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 ME2P23368 584 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 MLLT3P42568 568 aaPredicted RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 WNT3P56703 355 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SAMD4BQ5PRF9 694 aaKnown RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 USP53Q70EK8 1073 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 NET1Q7Z628 596 aaPredicted RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 ANKRD46Q86W74 232 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 FAIM2Q9BWQ8 316 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 CHRNA10Q9GZZ6 450 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 DENND2DQ9H6A0 471 aaPredicted RBP19.98■□□□□ 0.79
VPS28-208ENST00000527797 PDE7BQ9NP56 450 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SERHLQ9NQF3 203 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 SOHLH2Q9NX45 425 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 L3MBTL1Q9Y468 752 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 U3KQA8 63 aa19.98■□□□□ 0.79
VPS28-208ENST00000527797 A0A096LPI6 279 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 IGHV5-51A0A0C4DH38 117 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 PRSS51A0A1B0GVH4 220 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 EME2A4GXA9 379 aaPredicted RBP19.97■□□□□ 0.79
VPS28-208ENST00000527797 TXNDC9O14530 226 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 SCN2BO60939 215 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 SCELO95171 688 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 ZBTB11O95625 1053 aaPredicted RBP19.97■□□□□ 0.79
VPS28-208ENST00000527797 C9P02748 559 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 SMIM10L1P0DMW3 83 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 ZNF10P21506 573 aaPredicted RBP19.97■□□□□ 0.79
VPS28-208ENST00000527797 LRRC74AQ0VAA2 488 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 DEFB110Q30KQ9 67 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 WASHC2DQ5SRD0 308 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 C1orf146Q5VVC0 180 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 MRM1Q6IN84 353 aaKnown RBP19.97■□□□□ 0.79
VPS28-208ENST00000527797 NANOGP8Q6NSW7 305 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 GUSBP11Q6P575 273 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms