RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 KLHL31Q9H511 634 aa12.04□□□□□ -0.48
CLCN3-210ENST00000515420 CPSF2Q9P2I0 782 aaKnown RBP12.04□□□□□ -0.48
CLCN3-210ENST00000515420 XPR1Q9UBH6 696 aa12.04□□□□□ -0.48
CLCN3-210ENST00000515420 B3GNT3Q9Y2A9 372 aa12.04□□□□□ -0.48
CLCN3-210ENST00000515420 PCDHGA11Q9Y5H2 935 aa12.04□□□□□ -0.48
CLCN3-210ENST00000515420 E2F3O00716 465 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 B3GALT2O43825 422 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 SMIM24O75264 130 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 MYBL2P10244 700 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 SOX11P35716 441 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 PIK3CBP42338 1070 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 TSFMP43897 325 aaKnown RBP12.03□□□□□ -0.48
CLCN3-210ENST00000515420 CD97P48960 835 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 MTTPP55157 894 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 BTN3A2P78410 334 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 FOXK1P85037 733 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 MFAP5Q13361 173 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 GTF2H2Q13888 395 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 RCN2Q14257 317 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 NSDHLQ15738 373 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 EXT1Q16394 746 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 TMEM35AQ53FP2 167 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 C10orf62Q5T681 223 aaPredicted RBP12.03□□□□□ -0.48
CLCN3-210ENST00000515420 GTF2H2CQ6P1K8 395 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 ABHD17CQ6PCB6 329 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 ISLR2Q6UXK2 745 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 Q6ZS92 163 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 LANCL3Q6ZV70 420 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 CHSY3Q70JA7 882 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 GOLGA7Q7Z5G4 137 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 CA13Q8N1Q1 262 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 L3MBTL4Q8NA19 623 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 OR7G3Q8NG95 312 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 REPS1Q96D71 796 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 CMTM7Q96FZ5 175 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 SCYL1Q96KG9 808 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 QRFPRQ96P65 431 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 KCNC2Q96PR1 638 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 SERINC2Q96SA4 455 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 WDR77Q9BQA1 342 aaPredicted RBP12.03□□□□□ -0.48
CLCN3-210ENST00000515420 TBCDQ9BTW9 1192 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 MS4A8Q9BY19 250 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 PRDM9Q9NQV7 894 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 ZNF358Q9NW07 568 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 MMACHCQ9Y4U1 282 aa12.03□□□□□ -0.48
CLCN3-210ENST00000515420 IGKV3D-11A0A0A0MRZ8 115 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 TTLL8A6PVC2 850 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 H0YIV9 168 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 PRMT3O60678 531 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 SCELO95171 688 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 B3GALT4O96024 378 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 GSTA1P08263 222 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 RAB38P57729 211 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 OLR1P78380 273 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 PHEXP78562 749 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 RASA2Q15283 850 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 PTGR2Q8N8N7 351 aaPredicted RBP12.02□□□□□ -0.49
CLCN3-210ENST00000515420 Q8NA96 180 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 ARMC2Q8NEN0 867 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 M1APQ8TC57 530 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 PSMF1Q92530 271 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 MIB2Q96AX9 1013 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 MAGEB10Q96LZ2 347 aaPredicted RBP12.02□□□□□ -0.49
CLCN3-210ENST00000515420 LPAR4Q99677 370 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 CENPKQ9BS16 269 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 NTMT1Q9BV86 223 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 C1QTNF3Q9BXJ4 246 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 TRIM4Q9C037 500 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 RNF32Q9H0A6 362 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 IPPKQ9H8X2 491 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 ACTR8Q9H981 624 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 COPS7BQ9H9Q2 264 aaPredicted RBP12.02□□□□□ -0.49
CLCN3-210ENST00000515420 SLAMF7Q9NQ25 335 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 PSD3Q9NYI0 1048 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 PPT2Q9UMR5 302 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 MRPS33Q9Y291 106 aaKnown RBP12.02□□□□□ -0.49
CLCN3-210ENST00000515420 NBASA2RRP1 2371 aa12.02□□□□□ -0.49
CLCN3-210ENST00000515420 SHANK1Q9Y566 2161 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 UBR5O95071 2799 aaPredicted RBP12.01□□□□□ -0.49
CLCN3-210ENST00000515420 TCRBV16S1A1N1A0A5B0 115 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 BLACEA4D250 179 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 CLDN4O14493 209 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 DNAJB6O75190 326 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 CDC123O75794 336 aaPredicted RBP12.01□□□□□ -0.49
CLCN3-210ENST00000515420 SIX3O95343 332 aaPredicted RBP12.01□□□□□ -0.49
CLCN3-210ENST00000515420 ITGAMP11215 1152 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 EEF1DP29692 281 aaKnown RBP12.01□□□□□ -0.49
CLCN3-210ENST00000515420 PLA2G16P53816 162 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 HSD17B7P56937 341 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 TERF2Q15554 542 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 BTBD16Q32M84 506 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 SFT2D3Q587I9 215 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 KHDRBS2Q5VWX1 349 aaKnown RBP12.01□□□□□ -0.49
CLCN3-210ENST00000515420 B3GNTL1Q67FW5 361 aaPredicted RBP12.01□□□□□ -0.49
CLCN3-210ENST00000515420 ADNP2Q6IQ32 1131 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 H3F3CQ6NXT2 135 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 PAPD4Q6PIY7 484 aaKnown RBP12.01□□□□□ -0.49
CLCN3-210ENST00000515420 TDRPQ86YL5 185 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 SCUBE1Q8IWY4 988 aa12.01□□□□□ -0.49
CLCN3-210ENST00000515420 ZNF595Q8IYB9 648 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms