RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 OTX2P32243 289 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 XCR1P46094 333 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 KRT6CP48668 564 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 PLA2G16P53816 162 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 EMP2P54851 167 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 MTTPP55157 894 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 SNRPNP63162 240 aaKnown RBP13.49□□□□□ -0.25
NUP54-216ENST00000514901 MAT1AQ00266 395 aaKnown RBP13.49□□□□□ -0.25
NUP54-216ENST00000514901 KLC1Q07866 573 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 DDX39BQ13838 428 aaKnown RBP13.49□□□□□ -0.25
NUP54-216ENST00000514901 RCN2Q14257 317 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 PCLAFQ15004 111 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 AP5B1Q2VPB7 878 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 DEFB109BQ30KR1 87 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 ADNP2Q6IQ32 1131 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 LETMD1Q6P1Q0 360 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 BORAQ6PGQ7 559 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 FRMD7Q6ZUT3 714 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 MED25Q71SY5 747 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 ZC3H7AQ8IWR0 971 aaKnown RBP13.49□□□□□ -0.25
NUP54-216ENST00000514901 ADAMTS18Q8TE60 1221 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 APOBEC4Q8WW27 367 aaKnown RBP13.49□□□□□ -0.25
NUP54-216ENST00000514901 TBC1D20Q96BZ9 403 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 QRFPRQ96P65 431 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 SERINC2Q96SA4 455 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 SERPINI1Q99574 410 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 CRB3Q9BUF7 120 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 VIPAS39Q9H9C1 493 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 COPS7BQ9H9Q2 264 aaPredicted RBP13.49□□□□□ -0.25
NUP54-216ENST00000514901 BRF2Q9HAW0 419 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 PRDM7Q9NQW5 492 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 NMRK1Q9NWW6 199 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 AHSPQ9NZD4 102 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 HCN3Q9P1Z3 774 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 C3orf18Q9UK00 162 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 ZNF225Q9UK10 706 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 LHX6Q9UPM6 363 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 ITPR1Q14643 2758 aa13.49□□□□□ -0.25
NUP54-216ENST00000514901 MAGEB17A8MXT2 336 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 ERVH48-1M5A8F1 160 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 PSMD12O00232 456 aaPredicted RBP13.48□□□□□ -0.25
NUP54-216ENST00000514901 FFAR3O14843 346 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 GPR42O15529 346 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 ULK1O75385 1050 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 OR4F21O95013 312 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 SEMA3DO95025 777 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 FURINP09958 794 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 RNH1P13489 461 aaKnown RBP13.48□□□□□ -0.25
NUP54-216ENST00000514901 HSD3B1P14060 373 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 JAK1P23458 1154 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 HSD3B2P26439 372 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 ALDH3A1P30838 453 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 SERPINB5P36952 375 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 ETV4P43268 484 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 CCR10P46092 362 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 NEK2P51955 445 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 RAP1GDS1P52306 607 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 RRADP55042 308 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 RPS13P62277 151 aaKnown RBP13.48□□□□□ -0.25
NUP54-216ENST00000514901 TBR1Q16650 682 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 SYT16Q17RD7 645 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 TUBB8Q3ZCM7 444 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 FAM69BQ5VUD6 431 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 CDYL2Q8N8U2 506 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 TMEM102Q8N9M5 508 aaPredicted RBP13.48□□□□□ -0.25
NUP54-216ENST00000514901 METTL6Q8TCB7 284 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 SELENOMQ8WWX9 145 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 WBP1Q96G27 269 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 FER1L6-AS2Q96M78 137 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 GATA5Q9BWX5 397 aaPredicted RBP13.48□□□□□ -0.25
NUP54-216ENST00000514901 OR51B5Q9H339 312 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 MID1IP1Q9NPA3 183 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 KCNK9Q9NPC2 374 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 ACSS2Q9NR19 701 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 MAN2B2Q9Y2E5 1009 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 FAM208BQ5VWN6 2430 aa13.48□□□□□ -0.25
NUP54-216ENST00000514901 A0A1B0GTL3 188 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 ZNF860A6NHJ4 632 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 IDSB3KWA1 339 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 BIRC5O15392 142 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 NPHS1O60500 1241 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 SCELO95171 688 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 B3GALT4O96024 378 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 BPGMP07738 259 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 FHP07954 510 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 ATP5A1P25705 553 aaKnown RBP13.47□□□□□ -0.25
NUP54-216ENST00000514901 HMOX2P30519 316 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 SLC18A1P54219 525 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 GALNT1Q10472 559 aaPredicted RBP13.47□□□□□ -0.25
NUP54-216ENST00000514901 ATP1A1-AS1Q5TC04 95 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 AGBL2Q5U5Z8 902 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 OR4C11Q6IEV9 310 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 SHISA6Q6ZSJ9 500 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 PPP1R32Q7Z5V6 425 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 UBE3DQ7Z6J8 389 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 MRGPREQ86SM8 312 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 LAPTM4BQ86VI4 370 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 APLFQ8IW19 511 aaPredicted RBP13.47□□□□□ -0.25
NUP54-216ENST00000514901 PRSS58Q8IYP2 241 aa13.47□□□□□ -0.25
NUP54-216ENST00000514901 CA13Q8N1Q1 262 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms