RNA–Protein interactions for RNA: ENST00000514536.5

USP46-209, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2

Gene USP46, Length 1,589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-209ENST00000514536 RDH11Q8TC12 318 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 NACC2Q96BF6 587 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 L3HYPDHQ96EM0 354 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 CMTM7Q96FZ5 175 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 QRFPRQ96P65 431 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 SMC6Q96SB8 1091 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 RBCK1Q9BYM8 510 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 TRIM55Q9BYV6 548 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 MKS1Q9NXB0 559 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 SLC17A7Q9P2U7 560 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 TSC22D4Q9Y3Q8 395 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 CCDC88CQ9P219 2028 aa13.18□□□□□ -0.3
USP46-209ENST00000514536 MAGEB17A8MXT2 336 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 AGPSO00116 658 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 SAP18O00422 153 aaKnown RBP13.17□□□□□ -0.3
USP46-209ENST00000514536 CDC123O75794 336 aaPredicted RBP13.17□□□□□ -0.3
USP46-209ENST00000514536 IL10P22301 178 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 NAGLUP54802 743 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 RPS13P62277 151 aaKnown RBP13.17□□□□□ -0.3
USP46-209ENST00000514536 PHEXP78562 749 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 TGM3Q08188 693 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 RUNX2Q13950 521 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 TMEM35AQ53FP2 167 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 DEPDC1Q5TB30 811 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 KHDRBS2Q5VWX1 349 aaKnown RBP13.17□□□□□ -0.3
USP46-209ENST00000514536 FAM219BQ5XKK7 198 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 LETMD1Q6P1Q0 360 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 APLFQ8IW19 511 aaPredicted RBP13.17□□□□□ -0.3
USP46-209ENST00000514536 CA13Q8N1Q1 262 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 TMEM102Q8N9M5 508 aaPredicted RBP13.17□□□□□ -0.3
USP46-209ENST00000514536 SRFBP1Q8NEF9 429 aaKnown RBP13.17□□□□□ -0.3
USP46-209ENST00000514536 WDR20Q8TBZ3 569 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 TCP10LQ8TDR4 215 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 SLC39A7Q92504 469 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 TBC1D20Q96BZ9 403 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 C8orf44Q96CB5 159 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 VN1R1Q9GZP7 353 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 CLK4Q9HAZ1 481 aaKnown RBP13.17□□□□□ -0.3
USP46-209ENST00000514536 DMRT3Q9NQL9 472 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 PRDM7Q9NQW5 492 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 OXSMQ9NWU1 459 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 ZNF225Q9UK10 706 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 FBXL4Q9UKA2 621 aa13.17□□□□□ -0.3
USP46-209ENST00000514536 A0A088AWK7 358 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 FAM227AF5H4B4 570 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 RTCAO00442 366 aaKnown RBP13.16□□□□□ -0.3
USP46-209ENST00000514536 B3GALT2O43825 422 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 B4GALT2O60909 372 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 ALOX12BO75342 701 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 OR4F21O95013 312 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 RNH1P13489 461 aaKnown RBP13.16□□□□□ -0.3
USP46-209ENST00000514536 ZNF10P21506 573 aaPredicted RBP13.16□□□□□ -0.3
USP46-209ENST00000514536 PTX3P26022 381 aaPredicted RBP13.16□□□□□ -0.3
USP46-209ENST00000514536 EFNA3P52797 238 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 RRADP55042 308 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 DNAJB13P59910 316 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 GGTA1PQ4G0N0 100 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 SGO1Q5FBB7 561 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 DCAF10Q5QP82 559 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 FRG2Q64ET8 278 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 LRIG3Q6UXM1 1119 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 C10orf107Q8IVU9 208 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 OR11G2Q8NGC1 345 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 FER1L6-AS2Q96M78 137 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 KCNC2Q96PR1 638 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 FAM111AQ96PZ2 611 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 FRG2BQ96QU4 278 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 OR1F2PQ96R84 312 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 SERINC2Q96SA4 455 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 NPLQ9BXD5 320 aaPredicted RBP13.16□□□□□ -0.3
USP46-209ENST00000514536 GSTO2Q9H4Y5 243 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 COPS7BQ9H9Q2 264 aaPredicted RBP13.16□□□□□ -0.3
USP46-209ENST00000514536 LANCL2Q9NS86 450 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 MID2Q9UJV3 735 aa13.16□□□□□ -0.3
USP46-209ENST00000514536 A6NL46 340 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 FOXE1O00358 373 aaPredicted RBP13.15□□□□□ -0.3
USP46-209ENST00000514536 MLYCDO95822 493 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 PRB1P04280 392 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 FHP07954 510 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 ACPPP15309 386 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 CERS1P27544 350 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 MTTPP55157 894 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 IFT88Q13099 833 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 KCNAB2Q13303 367 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 AP5B1Q2VPB7 878 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 CFAP157Q5JU67 520 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 ZNF793Q6ZN11 406 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 GPRIN3Q6ZVF9 776 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 CROCCP2Q86T23 111 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 EXOC3L1Q86VI1 746 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 CDYL2Q8N8U2 506 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 LSM14AQ8ND56 463 aaKnown RBP13.15□□□□□ -0.3
USP46-209ENST00000514536 METTL21AQ8WXB1 218 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 RGMAQ96B86 450 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 VPS50Q96JG6 964 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 MAGEB10Q96LZ2 347 aaPredicted RBP13.15□□□□□ -0.3
USP46-209ENST00000514536 ZNF382Q96SR6 550 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 TBCDQ9BTW9 1192 aa13.15□□□□□ -0.3
USP46-209ENST00000514536 SORBS1Q9BX66 1292 aaKnown RBP13.15□□□□□ -0.3
USP46-209ENST00000514536 SEMA4CQ9C0C4 833 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms