RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 HSPB3Q12988 150 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLBPQ14493 270 aaKnown RBP eCLIP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FAM209AQ5JX71 171 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ATAD3CQ5T2N8 411 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TMEM132CQ8N3T6 1108 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TTC29Q8NA56 475 aaPredicted RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LSM14AQ8ND56 463 aaKnown RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OVCA2Q8WZ82 227 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TEX37Q96LM6 180 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GPR78Q96P69 363 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MCMBPQ9BTE3 642 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MRM3Q9HC36 420 aaKnown RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PCTPQ9UKL6 214 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CFL2Q9Y281 166 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FABP12A6NFH5 140 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NRG2O14511 850 aaPredicted RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 KAT7O95251 611 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MVKQ03426 396 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C2orf80Q0P641 193 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FAM78AQ5JUQ0 283 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FAM122CQ6P4D5 195 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SVOPLQ8N434 492 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZCCHC10Q8TBK6 192 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FAM110BQ8TC76 370 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC13A3Q8WWT9 602 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ATOH8Q96SQ7 321 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CNPPD1Q9BV87 410 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ITPAQ9BY32 194 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PBX4Q9BYU1 374 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CARS2Q9HA77 564 aaKnown RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CACYBPQ9HB71 228 aaKnown RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SNTG1Q9NSN8 517 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ADAM30Q9UKF2 790 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RAB23Q9ULC3 237 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MAPRE3Q9UPY8 281 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RNF6Q9Y252 685 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 WDR81Q562E7 1941 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CEP250Q9BV73 2442 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SCN10AQ9Y5Y9 1956 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 H7BY64 318 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DHFRP00374 187 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PDYNP01213 254 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZDHHC11BP0C7U3 371 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PIM1P11309 404 aaPredicted RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 VIPR1P32241 457 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HK3P52790 923 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ITGA1P56199 1179 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RPS14P62263 151 aaKnown RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ERVK-8P63133 956 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MAB21L1Q13394 359 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ATP6AP1Q15904 470 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SNAPC1Q16533 368 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GPR33Q49SQ1 333 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LCN1P1Q5VSP4 162 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TMEM150AQ86TG1 271 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TEX26Q8N6G2 289 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TMEM145Q8NBT3 493 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 KCT2Q8NC54 265 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HERVK_113Q902F9 699 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 EID2BQ96D98 161 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RNFT2Q96EX2 444 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 UBXN10Q96LJ8 280 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PRAP1Q96NZ9 151 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DPH2Q9BQC3 489 aaPredicted RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TRMT61BQ9BVS5 477 aaKnown RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DPEP2Q9H4A9 486 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C1orf109Q9NX04 203 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PDP1Q9P0J1 537 aaPredicted RBP10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GRIP1Q9Y3R0 1128 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SSNA1O43805 119 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ORC5O43913 435 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CD47Q08722 323 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZNF805Q5CZA5 627 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 BICRALQ6AI39 1079 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CAPN13Q6MZZ7 669 aaPredicted RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 BRAT1Q6PJG6 821 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PARS2Q7L3T8 475 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TIGD4Q8IY51 512 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 P2RY13Q9BPV8 354 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MLXQ9UH92 298 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SARDHQ9UL12 918 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SSR3Q9UNL2 185 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MRPS7Q9Y2R9 242 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LYVE1Q9Y5Y7 322 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TCRBV3S1A0A5B6 114 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FEZF1A0PJY2 475 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR52A4PA6NMU1 304 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC1A7O00341 560 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ACOT8O14734 319 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MYL12BO14950 172 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ACOX3O15254 700 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MT-ND2P03891 347 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CYP17A1P05093 508 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 KLK1P06870 262 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GSTM1P09488 218 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C6P13671 934 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CA5AP35218 305 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PTSQ03393 145 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GRSF1Q12849 480 aaKnown RBP eCLIP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 EIF2B5Q13144 721 aaKnown RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms