RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 TRPV3Q8NET8 790 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 GPR156Q8NFN8 814 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 OR7A2PQ8NGA2 310 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 OR4K1Q8NGD4 311 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 OR8J3Q8NGG0 315 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 OR52E1Q8NGJ3 308 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 OR2L8Q8NGY9 312 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 INPP5KQ9BT40 448 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 PCBD2Q9H0N5 130 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 OR51B5Q9H339 312 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 IKZF5Q9H5V7 419 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 POLR1BQ9H9Y6 1135 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 TM9SF3Q9HD45 589 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 GPR27Q9NS67 375 aa11.63□□□□□ -0.55
HDAC6-230ENST00000488543 TMEM221A6NGB7 291 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 M0R296 226 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 PRICKLE3O43900 615 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 TGFB1P01137 390 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 HTR1EP28566 365 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 DCTN2Q13561 401 aaKnown RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 PGS1Q32NB8 556 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 CYBRD1Q53TN4 286 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 RUNDC3AQ59EK9 446 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 ABRAXAS1Q6UWZ7 409 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 TMIGD1Q6UXZ0 262 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 ERI1Q8IV48 349 aaKnown RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 WDR48Q8TAF3 677 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 UBE2E3Q969T4 207 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 TRIM15Q9C019 465 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 KCNH6Q9H252 994 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 RHBGQ9H310 441 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 ZNF624Q9P2J8 865 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 ANAPC2Q9UJX6 822 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 EXO1Q9UQ84 846 aaKnown RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 DGKBQ9Y6T7 804 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 A0A096LPI6 279 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 IGKV1-8A0A0C4DH67 115 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 LAMTOR5O43504 91 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 GPR37L1O60883 481 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 SCN2BO60939 215 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 MYO1DO94832 1006 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 RASAL1O95294 804 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 BMP10O95393 424 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 TNFP01375 233 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 ANXA4P09525 319 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 TDGF1P13385 188 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 SHMT2P34897 504 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 CDKN2CP42773 168 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 HNRNPFP52597 415 aaKnown RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 PIGFQ07326 219 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 RAB39AQ14964 217 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 C16orf72Q14CZ0 275 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 PRRT3Q5FWE3 981 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 FGD3Q5JSP0 725 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 INTS11Q5TA45 600 aaKnown RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 OR4F3Q6IEY1 312 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 WASH2PQ6VEQ5 465 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 MSANTD1Q6ZTZ1 278 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 C1orf210Q8IVY1 113 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 KRT78Q8N1N4 520 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 METTL4Q8N3J2 472 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 SDR16C5Q8N3Y7 309 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 ANKRD53Q8N9V6 530 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 MFSD2AQ8NA29 543 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 OR10Q1Q8NGQ4 319 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 OR2A1Q8NGT9 310 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 CPPED1Q9BRF8 314 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-230ENST00000488543 MUC13Q9H3R2 512 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 BTBD3Q9Y2F9 522 aa11.62□□□□□ -0.55
HDAC6-230ENST00000488543 CEP192Q8TEP8 1941 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 THADAQ6YHU6 1953 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 A6NCN8 305 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 TLR4O00206 839 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 YY2O15391 372 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PCDH7O60245 1069 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 NR4A1P22736 598 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PEBP1P30086 187 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 CCR8P51685 355 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 RACK1P63244 317 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 TAGLNQ01995 201 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 KRT33BQ14525 404 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 ADRM1Q16186 407 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 COMMD6Q7Z4G1 85 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 SPRED1Q7Z699 444 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 GPR180Q86V85 440 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 ANKRD46Q86W74 232 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 RAB42Q8N4Z0 105 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 SH3KBP1Q96B97 665 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 ITCHQ96J02 903 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 ZNF583Q96ND8 569 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 C9orf16Q9BUW7 83 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 CHID1Q9BWS9 393 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 RAB11FIP5Q9BXF6 653 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 REXO4Q9GZR2 422 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 KIR3DX1Q9H7L2 352 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 NT5DC2Q9H857 520 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 CXorf21Q9HAI6 301 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 TMEM74BQ9NUR3 256 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms