RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	CEACAM20	Q6UY09	585 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	HSD11B1L	Q7Z5J1	315 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	LURAP1L	Q8IV03	231 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	NRSN1	Q8IZ57	195 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ADGRF3	Q8IZF5	1079 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	NDUFAF2	Q8N183	169 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	BBS5	Q8N3I7	341 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SFRP1	Q8N474	314 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PAQR4	Q8N4S7	273 aa	Predicted RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	NEK11	Q8NG66	645 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	OR10G6	Q8NH81	332 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	C9orf43	Q8TAL5	461 aa	Predicted RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PDCD6IP	Q8WUM4	868 aa	Known RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	APOBEC4	Q8WW27	367 aa	Known RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PIH1D2	Q8WWB5	315 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PATE1	Q8WXA2	126 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SH3KBP1	Q96B97	665 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	AP2M1	Q96CW1	435 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	RTP4	Q96DX8	246 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	IQCD	Q96DY2	449 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	OR2M4	Q96R27	311 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	MCCC1	Q96RQ3	725 aa	Predicted RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SNRNP25	Q9BV90	132 aa	Known RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SF3B5	Q9BWJ5	86 aa	Known RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PCDHAC1	Q9H158	963 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ABCG8	Q9H221	673 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SUDS3	Q9H7L9	328 aa	Predicted RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ZWILCH	Q9H900	591 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GPN2	Q9H9Y4	310 aa	Predicted RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	NOD2	Q9HC29	1040 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PLSCR4	Q9NRQ2	329 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SEPT11	Q9NVA2	429 aa	Known RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PARVA	Q9NVD7	372 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GPATCH2L	Q9NWQ4	482 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	CWC15	Q9P013	229 aa	Known RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TMEM9	Q9P0T7	183 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PCSK1N	Q9UHG2	260 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	MYO6	Q9UM54	1294 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TMEM184B	Q9Y519	407 aa	Predicted RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ITPR2	Q14571	2701 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ZNF106	Q9H2Y7	1883 aa	Known RBP	3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SHANK1	Q9Y566	2161 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	UNC79	Q9P2D8	2635 aa		3.87	□□□□□ -1.79
SNRNP40-205	ENST00000486941	MDC1	Q14676	2089 aa	Known RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ANKRD12	Q6UB98	2062 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	UTP20	O75691	2785 aa	Known RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TNRC6A	Q8NDV7	1962 aa	Known RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	LOC101059948	A0A1B0GTJ6	334 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GOLGA6C	A6NDK9	693 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GOLGA6B	A6NDN3	693 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	NPIPB15	A6NHN6	443 aa	Predicted RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	OR5K4	A6NMS3	321 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	POLR1C	O15160	346 aa	Predicted RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GRID2	O43424	1007 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	DUX1	O43812	170 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PRPSAP2	O60256	369 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	NEURL1	O76050	574 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PGLS	O95336	258 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	NDST3	O95803	873 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SOD1	P00441	154 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ANKRD34C	P0C6C1	535 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GOLGA6D	P0CG33	693 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GZMA	P12544	262 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SLC2A4	P14672	509 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ZNF30	P17039	623 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TCN2	P20062	427 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TNFAIP3	P21580	790 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	OAS2	P29728	719 aa	Known RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PCK1	P35558	622 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	CDH6	P55285	790 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	RPL36A	P83881	106 aa	Known RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	CDC20	Q12834	499 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	KLRB1	Q12918	225 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TRAF2	Q12933	501 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	DPYSL2	Q16555	572 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	LACTB2	Q53H82	288 aa	Predicted RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	BOLA3	Q53S33	107 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941		Q5PR19	223 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ARMC12	Q5T9G4	340 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	MARC1	Q5VT66	337 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GFI1B	Q5VTD9	330 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	LRRC66	Q68CR7	880 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	MRNIP	Q6NTE8	343 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	IYD	Q6PHW0	289 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TMCO3	Q6UWJ1	677 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TIPARP	Q7Z3E1	657 aa	Known RBP	3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	KDELC2	Q7Z4H8	507 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	SLC9B2	Q86UD5	537 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TSPAN33	Q86UF1	283 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	GALNT13	Q8IUC8	556 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	LRRC49	Q8IUZ0	686 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	PGBD5	Q8N414	524 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ESX1	Q8N693	406 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	TEX26	Q8N6G2	289 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	NPW	Q8N729	165 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	AVL9	Q8NBF6	648 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	ANKRD20A12P	Q8NF67	263 aa		3.86	□□□□□ -1.79
SNRNP40-205	ENST00000486941	EXD1	Q8NHP7	514 aa		3.86	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms