RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ITGA8P53708 1063 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RUNX2Q13950 521 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZNF460Q14592 562 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 FASTKD3Q14CZ7 662 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PRAMEF9Q5VWM5 478 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SCUBE1Q8IWY4 988 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZNF295-AS1Q8N0V1 137 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MS4A6EQ96DS6 147 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SEC16BQ96JE7 1060 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PDLIM2Q96JY6 352 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 QRFPRQ96P65 431 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PHF12Q96QT6 1004 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 DMRTA2Q96SC8 542 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 NPLQ9BXD5 320 aaPredicted RBP11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TRIM8Q9BZR9 551 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 NT5DC2Q9H857 520 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 POPDC3Q9HBV1 291 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SMYD2Q9NRG4 433 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZNF223Q9UK11 482 aaPredicted RBP11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 NPIPA1Q9UND3 350 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MMACHCQ9Y4U1 282 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PHF3Q92576 2039 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 HIVEP1P15822 2718 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 FAM95CA0A1B0GW59 222 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 NPEPPSL1A6NEC2 478 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TMEM200CA6NKL6 621 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TAPBPO15533 448 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MLYCDO95822 493 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 C1QAP02745 245 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GNAZP19086 355 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 POU3F2P20265 443 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ELAVL4P26378 380 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 HNRNPH1P31943 449 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 HNF4AP41235 474 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GDF5P43026 501 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ARL4CP56559 192 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 DR1Q01658 176 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 OC90Q02509 493 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 E2F2Q14209 437 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MAPKAPK3Q16644 382 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 C18orf21Q32NC0 220 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 VN1R5Q7Z5H4 357 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TMPRSS11BQ86T26 416 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 DOLPP1Q86YN1 238 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GHDCQ8N2G8 530 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CPSF7Q8N684 471 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TMEM52Q8NDY8 209 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 FBXO36Q8NEA4 188 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 B3GNT7Q8NFL0 401 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 C16orf52Q8NHV5 167 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PHF10Q8WUB8 498 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GAL3ST3Q96A11 431 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 WDR34Q96EX3 536 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RUNDC3BQ96NL0 473 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TREX2Q9BQ50 279 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PITHD1Q9GZP4 211 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 DERL2Q9GZP9 239 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TSPAN10Q9H1Z9 355 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RHOJQ9H4E5 214 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RUBCNLQ9H714 662 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PLSCR2Q9NRY7 297 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TRMT1Q9NXH9 659 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SH3BGRL2Q9UJC5 107 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 DYRK1BQ9Y463 629 aa11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 INTS1Q8N201 2190 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 HCFC1P51610 2035 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SPG11Q96JI7 2443 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 USP27XA6NNY8 438 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 C19orf84I3L1E1 186 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CYR61O00622 381 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 FANCGO15287 622 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZNHIT1O43257 154 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CLEC3AO75596 197 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GSTM2P28161 218 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 KIR3DL1P43629 444 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 HNRNPFP52597 415 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CASP6P55212 293 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 HSD17B7P56937 341 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 STXBP1P61764 594 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PDIA2Q13087 525 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RBBP5Q15291 538 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TGFBIQ15582 683 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TSNQ15631 228 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TOR1AIP1Q5JTV8 583 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CDKL4Q5MAI5 379 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TMIGD1Q6UXZ0 262 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CYS1Q717R9 158 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ADAMTSL2Q86TH1 951 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ANKMY2Q8IV38 441 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SULF2Q8IWU5 870 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 KLHL7Q8IXQ5 586 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 POGLUT1Q8NBL1 392 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 FAM98AQ8NCA5 519 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TTLQ8NG68 377 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 VPS39Q96JC1 886 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CAPZA3Q96KX2 299 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 DEFB126Q9BYW3 111 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 EHD1Q9H4M9 534 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GPRC5BQ9NZH0 403 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms