RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 DDX39BQ13838 428 aaKnown RBP17.83■□□□□ 0.44
PTCD3-210ENST00000473829 ABRAXAS2Q15018 415 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 ERCC6LQ2NKX8 1250 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 LIPJQ5W064 366 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 FAM219BQ5XKK7 198 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 METTL2BQ6P1Q9 378 aaKnown RBP17.83■□□□□ 0.44
PTCD3-210ENST00000473829 TRIM40Q6P9F5 258 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 SH2D5Q6ZV89 423 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 ANKRD37Q7Z713 158 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 ACMSDQ8TDX5 336 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 UBE2E3Q969T4 207 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 THOC3Q96J01 351 aaKnown RBP17.83■□□□□ 0.44
PTCD3-210ENST00000473829 VPS50Q96JG6 964 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 WDR77Q9BQA1 342 aaPredicted RBP17.83■□□□□ 0.44
PTCD3-210ENST00000473829 TRIM4Q9C037 500 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 EPN3Q9H201 632 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 ANAPC2Q9UJX6 822 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 G3BP2Q9UN86 482 aaKnown RBP17.83■□□□□ 0.44
PTCD3-210ENST00000473829 PCDHGB7Q9Y5F8 929 aa17.83■□□□□ 0.44
PTCD3-210ENST00000473829 A0A1B0GTL3 188 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 PCDH17O14917 1159 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 B4GALT2O60909 372 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 SEC24DO94855 1032 aaPredicted RBP17.82■□□□□ 0.44
PTCD3-210ENST00000473829 TGFB1P01137 390 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 RNH1P13489 461 aaKnown RBP17.82■□□□□ 0.44
PTCD3-210ENST00000473829 IL10P22301 178 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 PIK3CGP48736 1102 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 BTG2P78543 158 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 TRAF3Q13114 568 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 ZNF793Q6ZN11 406 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 CPEB2Q7Z5Q1 589 aaKnown RBP17.82■□□□□ 0.44
PTCD3-210ENST00000473829 RBMXL3Q8N7X1 1067 aaKnown RBP17.82■□□□□ 0.44
PTCD3-210ENST00000473829 L3MBTL4Q8NA19 623 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 TEX19Q8NA77 164 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 PLPP5Q8NEB5 264 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 HUS1BQ8NHY5 278 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 ZNF483Q8TF39 744 aaPredicted RBP17.82■□□□□ 0.44
PTCD3-210ENST00000473829 METTL21AQ8WXB1 218 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 FAR2Q96K12 515 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 IMMP1LQ96LU5 166 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 LHPPQ9H008 270 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 CLK4Q9HAZ1 481 aaKnown RBP17.82■□□□□ 0.44
PTCD3-210ENST00000473829 DMRT3Q9NQL9 472 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 PRDM7Q9NQW5 492 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 RIC8BQ9NVN3 520 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 EMCNQ9ULC0 261 aa17.82■□□□□ 0.44
PTCD3-210ENST00000473829 GCN1Q92616 2671 aaKnown RBP17.81■□□□□ 0.44
PTCD3-210ENST00000473829 MAGEB17A8MXT2 336 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 H0YIV9 168 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 SAP18O00422 153 aaKnown RBP17.81■□□□□ 0.44
PTCD3-210ENST00000473829 RTCAO00442 366 aaKnown RBP17.81■□□□□ 0.44
PTCD3-210ENST00000473829 PPP6CO00743 305 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 UGDHO60701 494 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 PRR35P0CG20 571 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 TSPAN8P19075 237 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 CASRP41180 1078 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 HNRNPFP52597 415 aaKnown RBP17.81■□□□□ 0.44
PTCD3-210ENST00000473829 RASA2Q15283 850 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 CPSF6Q16630 551 aaKnown RBP eCLIP17.81■□□□□ 0.44
PTCD3-210ENST00000473829 ATG14Q6ZNE5 492 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 LCA5Q86VQ0 697 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 TMEM52Q8NDY8 209 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 PSMF1Q92530 271 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 MTERF1Q99551 399 aaKnown RBP17.81■□□□□ 0.44
PTCD3-210ENST00000473829 C1QTNF3Q9BXJ4 246 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 MFRPQ9BY79 579 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 OR51B5Q9H339 312 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 SEMA4BQ9NPR2 832 aaPredicted RBP17.81■□□□□ 0.44
PTCD3-210ENST00000473829 C5AR2Q9P296 337 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 TSC22D4Q9Y3Q8 395 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 CPAMD8Q8IZJ3 1885 aa17.81■□□□□ 0.44
PTCD3-210ENST00000473829 B3GALT2O43825 422 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 DLX3O60479 287 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 GSTA1P08263 222 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 MAOAP21397 527 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 JAK1P23458 1154 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 SERPINB1P30740 379 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 MTTPP55157 894 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 CDH13P55290 713 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 ZRSR2Q15696 482 aaKnown RBP17.8■□□□□ 0.44
PTCD3-210ENST00000473829 NSDHLQ15738 373 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 SFT2D3Q587I9 215 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 KHDRBS2Q5VWX1 349 aaKnown RBP17.8■□□□□ 0.44
PTCD3-210ENST00000473829 QSOX2Q6ZRP7 698 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 KBTBD2Q8IY47 623 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 FAM47BQ8NA70 645 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 WDR20Q8TBZ3 569 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 CAVIN3Q969G5 261 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 CMTM7Q96FZ5 175 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 TMEM237Q96Q45 408 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 SERINC2Q96SA4 455 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 CSF3RQ99062 836 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 TUBB6Q9BUF5 446 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 NTMT1Q9BV86 223 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 SORBS1Q9BX66 1292 aaKnown RBP17.8■□□□□ 0.44
PTCD3-210ENST00000473829 NPLQ9BXD5 320 aaPredicted RBP17.8■□□□□ 0.44
PTCD3-210ENST00000473829 PARD6BQ9BYG5 372 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 PPCSQ9HAB8 311 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 NECTIN3Q9NQS3 549 aa17.8■□□□□ 0.44
PTCD3-210ENST00000473829 LUZP4Q9P127 313 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms