RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	SORBS2	O94875	1100 aa	Known RBP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	SNRPA	P09012	282 aa	Known RBP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	RBP1	P09455	135 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	FAM153B	P0C7A2	387 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	CD22	P20273	847 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	MAOA	P21397	527 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	IL10	P22301	178 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	CNTF	P26441	200 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	GSTM2	P28161	218 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	ALDH18A1	P54886	795 aa	Known RBP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	ZNF33B	Q06732	778 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	MFAP5	Q13361	173 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	SETDB1	Q15047	1291 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	FAM153C	Q494X1	144 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	TECRL	Q5HYJ1	363 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	CRB2	Q5IJ48	1285 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	ABHD17B	Q5VST6	288 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	PRAMEF9	Q5VWM5	478 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	B3GNTL1	Q67FW5	361 aa	Predicted RBP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	PAPD4	Q6PIY7	484 aa	Known RBP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	CPAMD8	Q8IZJ3	1885 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	CA13	Q8N1Q1	262 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	PTGR2	Q8N8N7	351 aa	Predicted RBP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	FAM47B	Q8NA70	645 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880		Q8NA96	180 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	ARMC2	Q8NEN0	867 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	DCAKD	Q8WVC6	231 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	MS4A6E	Q96DS6	147 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	F2RL3	Q96RI0	385 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	LPAR4	Q99677	370 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	FUT8	Q9BYC5	575 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	PITHD1	Q9GZP4	211 aa	Predicted RBP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	NT5DC2	Q9H857	520 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	LANCL2	Q9NS86	450 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	PLA2G3	Q9NZ20	509 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	XPR1	Q9UBH6	696 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	ZNF490	Q9ULM2	529 aa	Predicted RBP	13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	ESPL1	Q14674	2120 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	SVIL	O95425	2214 aa		13.94	□□□□□ -0.18
SSR4-208	ENST00000471880	MAGEB17	A8MXT2	336 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	SAP18	O00422	153 aa	Known RBP	13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	SIX3	O95343	332 aa	Predicted RBP	13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	TGFB1	P01137	390 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	MTHFD2	P13995	350 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	EPOR	P19235	508 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	CERS1	P27544	350 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	EEF1D	P29692	281 aa	Known RBP	13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	RAP1GDS1	P52306	607 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	BTG2	P78543	158 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	RHAG	Q02094	409 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	SLC13A2	Q13183	592 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	GTF2H2	Q13888	395 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	TSNAXIP1	Q2TAA8	658 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	FCRLB	Q6BAA4	426 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	GTF2H2C	Q6P1K8	395 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	IGFL3	Q6UXB1	125 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	OR2L5	Q8NG80	312 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	UBTD2	Q8WUN7	234 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	UBLCP1	Q8WVY7	318 aa	Predicted RBP	13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	MIB2	Q96AX9	1013 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	SLC29A3	Q9BZD2	475 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	AICDA	Q9GZX7	198 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	IPPK	Q9H8X2	491 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	TBK1	Q9UHD2	729 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	TEKT2	Q9UIF3	430 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	ZNF180	Q9UJW8	692 aa		13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	COPG1	Q9Y678	874 aa	Known RBP	13.93	□□□□□ -0.18
SSR4-208	ENST00000471880	SMIM23	A6NLE4	172 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	RTCA	O00442	366 aa	Known RBP	13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	CYC1	P08574	325 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	ABHD2	P08910	425 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	SMIM10L1	P0DMW3	83 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	SSR2	P43308	183 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	ST13	P50502	369 aa	Known RBP	13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	PHEX	P78562	749 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	SLC29A2	Q14542	456 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	ZNF169	Q14929	603 aa	Predicted RBP	13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	TBCC	Q15814	346 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	RIPOR1	Q6ZS17	1223 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	GOLGA7	Q7Z5G4	137 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	VN1R5	Q7Z5H4	357 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	CUZD1	Q86UP6	607 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	RNF175	Q8N4F7	328 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	CATSPER1	Q8NEC5	780 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	OR1N1	Q8NGS0	311 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	SUN3	Q8TAQ9	357 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	PPP4R1	Q8TF05	950 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	C19orf60	Q96EN9	201 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	SMIM10	Q96HG1	83 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	SEC16B	Q96JE7	1060 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	MTERF1	Q99551	399 aa	Known RBP	13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	CCDC77	Q9BR77	488 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	CENPK	Q9BS16	269 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	PRDM9	Q9NQV7	894 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	PRTFDC1	Q9NRG1	225 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	MRPS33	Q9Y291	106 aa	Known RBP	13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	TNPO3	Q9Y5L0	923 aa	Known RBP	13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	COL12A1	Q99715	3063 aa		13.92	□□□□□ -0.18
SSR4-208	ENST00000471880	IQANK1	A0A1B0GTG1	560 aa		13.91	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms