RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 GHDCQ8N2G8 530 aa16.36■□□□□ 0.21
COL7A1-208ENST00000470076 FBXO36Q8NEA4 188 aa16.36■□□□□ 0.21
COL7A1-208ENST00000470076 GAL3ST3Q96A11 431 aa16.36■□□□□ 0.21
COL7A1-208ENST00000470076 FAR2Q96K12 515 aa16.36■□□□□ 0.21
COL7A1-208ENST00000470076 TRIM51Q9BSJ1 452 aa16.36■□□□□ 0.21
COL7A1-208ENST00000470076 DEFB126Q9BYW3 111 aa16.36■□□□□ 0.21
COL7A1-208ENST00000470076 POPDC3Q9HBV1 291 aa16.36■□□□□ 0.21
COL7A1-208ENST00000470076 NECTIN3Q9NQS3 549 aa16.36■□□□□ 0.21
COL7A1-208ENST00000470076 PDZD2O15018 2839 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 C4orf51C9J302 202 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 E7ESA3 106 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 CCDC188H7C350 402 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 WDR47O94967 919 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 C1GALT1C1LP0DN25 315 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 ABOP16442 354 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 SLC6A12P48065 614 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 TSNQ15631 228 aaKnown RBP16.35■□□□□ 0.21
COL7A1-208ENST00000470076 TMIGD1Q6UXZ0 262 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 SLCO4C1Q6ZQN7 724 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 GDF7Q7Z4P5 450 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 ZNF227Q86WZ6 799 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 POGLUT1Q8NBL1 392 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 B3GNT7Q8NFL0 401 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 ADAMTS18Q8TE60 1221 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 ANKRD49Q8WVL7 239 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 RHBDF1Q96CC6 855 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 SEC16BQ96JE7 1060 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 NPLQ9BXD5 320 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-208ENST00000470076 CAPS2Q9BXY5 557 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 AICDAQ9GZX7 198 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 RHOJQ9H4E5 214 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 GPAMQ9HCL2 828 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 MEMO1Q9Y316 297 aa16.35■□□□□ 0.21
COL7A1-208ENST00000470076 A0A088AWK7 358 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 A8MUA0 341 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 TP73O15350 636 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 COX6B1P14854 86 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 ZNF10P21506 573 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-208ENST00000470076 ELAVL4P26378 380 aaKnown RBP16.34■□□□□ 0.21
COL7A1-208ENST00000470076 HPDP32754 393 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-208ENST00000470076 GDF5P43026 501 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 CLCN2P51788 898 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 SLC12A2P55011 1212 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 BTN3A2P78410 334 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 CBLBQ13191 982 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 FASTKD3Q14CZ7 662 aaKnown RBP16.34■□□□□ 0.21
COL7A1-208ENST00000470076 CEP97Q8IW35 865 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL7A1-208ENST00000470076 KRT78Q8N1N4 520 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 CPSF7Q8N684 471 aaKnown RBP16.34■□□□□ 0.21
COL7A1-208ENST00000470076 APCDD1LQ8NCL9 501 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 TRIM31Q9BZY9 425 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 PITHD1Q9GZP4 211 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-208ENST00000470076 KCNF1Q9H3M0 494 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 NT5DC2Q9H857 520 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 KLF13Q9Y2Y9 288 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-208ENST00000470076 SAR1BQ9Y6B6 198 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 ADGRG4Q8IZF6 3080 aa16.34■□□□□ 0.21
COL7A1-208ENST00000470076 TRBV11-1A0A0K0K1C0 115 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 LRIT2A6NDA9 550 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 EFCAB8A8MWE9 144 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 CLDN4O14493 209 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 MYO1DO94832 1006 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 HSD17B7P56937 341 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 SLBPQ14493 270 aaKnown RBP eCLIP16.33■□□□□ 0.2
COL7A1-208ENST00000470076 TGFBIQ15582 683 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 RNFT1Q5M7Z0 435 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 SCUBE1Q8IWY4 988 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 EID3Q8N140 333 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 TCAIMQ8N3R3 496 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 MS4A6EQ96DS6 147 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 PDLIM2Q96JY6 352 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 MCMBPQ9BTE3 642 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 DERL2Q9GZP9 239 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 GPRC5BQ9NZH0 403 aa16.33■□□□□ 0.2
COL7A1-208ENST00000470076 PPIEQ9UNP9 301 aaKnown RBP16.33■□□□□ 0.2
COL7A1-208ENST00000470076 MRPS33Q9Y291 106 aaKnown RBP16.33■□□□□ 0.2
COL7A1-208ENST00000470076 TEP1Q99973 2627 aaKnown RBP16.33■□□□□ 0.2
COL7A1-208ENST00000470076 SYNDIG1LA6NDD5 238 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 KLRC4-KLRK1H3BQV0 150 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 PRRG2O14669 202 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 ERI3O43414 337 aaKnown RBP16.32■□□□□ 0.2
COL7A1-208ENST00000470076 B3GALT2O43825 422 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 CLEC3AO75596 197 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 CLDN14O95500 239 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 HNRNPH1P31943 449 aaKnown RBP16.32■□□□□ 0.2
COL7A1-208ENST00000470076 PAFAH1B1P43034 410 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 RAB38P57729 211 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 GNG11P61952 73 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 POU4F1Q01851 419 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 RUNX2Q13950 521 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 C18orf21Q32NC0 220 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-208ENST00000470076 CHERPQ8IWX8 916 aaKnown RBP16.32■□□□□ 0.2
COL7A1-208ENST00000470076 ZBED8Q8IZ13 594 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 AGAP11Q8TF27 550 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 PHF10Q8WUB8 498 aaKnown RBP16.32■□□□□ 0.2
COL7A1-208ENST00000470076 CCT6BQ92526 530 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 MTFMTQ96DP5 389 aaKnown RBP16.32■□□□□ 0.2
COL7A1-208ENST00000470076 VMP1Q96GC9 406 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 EHD1Q9H4M9 534 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms