RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 OR52N2Q8NGI0 321 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 APH1BQ8WW43 257 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 OR52A5Q9H2C5 316 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 DPEP2Q9H4A9 486 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 MYNNQ9NPC7 610 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 TM7SF3Q9NS93 570 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 TBC1D23Q9NUY8 699 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 RLIMQ9NVW2 624 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 LMCD1Q9NZU5 365 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 SLC23A2Q9UGH3 650 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 PCDHGA6Q9Y5G7 932 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 NINQ8N4C6 2090 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 RANBP2P49792 3224 aaKnown RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 XIRP2A4UGR9 3374 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 GOLGA4Q13439 2230 aaKnown RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 J3KTA2 159 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 PI15O43692 258 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 DPM1O60762 260 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 DNAJB5O75953 348 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 PSMB9P28065 219 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 ALDH4A1P30038 563 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 CHI3L1P36222 383 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 LRRC74AQ0VAA2 488 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 PPIGQ13427 754 aaKnown RBP eCLIP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 CLCA4Q14CN2 919 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 FAM78AQ5JUQ0 283 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 DUS1LQ6P1R4 473 aaKnown RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 Q6ZNX1 250 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 AHSA2Q719I0 299 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 CACUL1Q86Y37 369 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 SLC5A8Q8N695 610 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 SMYD1Q8NB12 490 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 GIPC3Q8TF64 312 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 SMG7Q92540 1137 aaKnown RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 ZNF514Q96K75 400 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-217ENST00000466159 HRASLS5Q96KN8 279 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 PITX2Q99697 317 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 SLC6A16Q9GZN6 736 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 DYRK4Q9NR20 520 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 TAS2R9Q9NYW1 312 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 GPR34Q9UPC5 381 aa8.56□□□□□ -1.04
SYNE1-217ENST00000466159 TRPM6Q9BX84 2022 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 A0A1W2PRB8 838 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 E9PQ18 207 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 RTCAO00442 366 aaKnown RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 RGS10O43665 173 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TBX6O95947 436 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TPP2P29144 1249 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 SOAT1P35610 550 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 P2RY2P41231 377 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 PIK3CBP42338 1070 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 CDH12P55289 794 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 CYP4F2P78329 520 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 CDK6Q00534 326 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 SPIBQ01892 262 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 EEF1A2Q05639 463 aaKnown RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 PROX2Q3B8N5 592 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 ADPRMQ3LIE5 342 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 IFI44LQ53G44 452 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 C10orf62Q5T681 223 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 C16orf87Q6PH81 154 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 ERN2Q76MJ5 926 aaKnown RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TFGQ92734 400 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 DNASE1L2Q92874 299 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 LGR4Q9BXB1 951 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TMEM245Q9H330 911 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 ACOT13Q9NPJ3 140 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TAAR2Q9P1P5 351 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 RNF6Q9Y252 685 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 NUP210Q8TEM1 1887 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TOR1BO14657 336 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 ADAMDEC1O15204 470 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 VEGFDO43915 354 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 GABARAPO95166 117 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 PTX3P26022 381 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 OPRL1P41146 370 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 VBP1P61758 197 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 FPGSQ05932 587 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 FCHO2Q0JRZ9 810 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TMEM52BQ4KMG9 183 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 SYT6Q5T7P8 510 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TRIM40Q6P9F5 258 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 ADGRD2Q7Z7M1 963 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 SLC9B2Q86UD5 537 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 AMZ2Q86W34 360 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 HEATR4Q86WZ0 1026 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 FAM129CQ86XR2 697 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 OR10G2Q8NGC3 310 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 NDNFQ8TB73 568 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 CXorf40AQ8TE69 158 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 SETD7Q8WTS6 366 aaKnown RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 SNRNP27Q8WVK2 155 aaKnown RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 RAD51AP1Q96B01 352 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 YIPF6Q96EC8 236 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 PPP1R16AQ96I34 528 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 ZNF300Q96RE9 604 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-217ENST00000466159 NIPSNAP1Q9BPW8 284 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 GABARAPL3Q9BY60 117 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 ABCG4Q9H172 646 aa8.55□□□□□ -1.04
SYNE1-217ENST00000466159 TMEM38AQ9H6F2 299 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms