RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ILF2Q12905 390 aaKnown RBP14.38□□□□□ -0.11
SKA3-204ENST00000462482 SLC13A2Q13183 592 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 TERF2Q15554 542 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 HP1BP3Q5SSJ5 553 aaPredicted RBP14.38□□□□□ -0.11
SKA3-204ENST00000462482 TMEM211Q6ICI0 200 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 PAOXQ6QHF9 649 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 SBSNQ6UWP8 590 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 C3P1Q6ZMU1 363 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 SYDE1Q6ZW31 735 aaPredicted RBP14.38□□□□□ -0.11
SKA3-204ENST00000462482 ADAMTSL2Q86TH1 951 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 IGDCC3Q8IVU1 814 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 CA13Q8N1Q1 262 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 ANKRD53Q8N9V6 530 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 GAL3ST3Q96A11 431 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 VMP1Q96GC9 406 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 RUNDC3BQ96NL0 473 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 NPLQ9BXD5 320 aaPredicted RBP14.38□□□□□ -0.11
SKA3-204ENST00000462482 DDX47Q9H0S4 455 aaKnown RBP14.38□□□□□ -0.11
SKA3-204ENST00000462482 NECTIN3Q9NQS3 549 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 PRTFDC1Q9NRG1 225 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 SLC17A6Q9P2U8 582 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 CTNNAL1Q9UBT7 734 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 SNX12Q9UMY4 172 aa14.38□□□□□ -0.11
SKA3-204ENST00000462482 NPEPPSL1A6NEC2 478 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 CDC7O00311 574 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 B3GALT2O43825 422 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 WDR47O94967 919 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 C1GALT1C1LP0DN25 315 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 ZNF37AP17032 561 aaPredicted RBP14.37□□□□□ -0.11
SKA3-204ENST00000462482 SSR4P51571 173 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 HSD17B7P56937 341 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 TGM3Q08188 693 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 MGAT5Q09328 741 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 RNFT1Q5M7Z0 435 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 TMIGD1Q6UXZ0 262 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 SULF2Q8IWU5 870 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 NFAM1Q8NET5 270 aaPredicted RBP14.37□□□□□ -0.11
SKA3-204ENST00000462482 FAM57AQ8TBR7 257 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 ASB5Q8WWX0 329 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 SLCO2A1Q92959 643 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 C14orf79Q96F83 325 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 PDLIM2Q96JY6 352 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 KLHL31Q9H511 634 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 COPS7BQ9H9Q2 264 aaPredicted RBP14.37□□□□□ -0.11
SKA3-204ENST00000462482 NSMCE4AQ9NXX6 385 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 OARD1Q9Y530 152 aa14.37□□□□□ -0.11
SKA3-204ENST00000462482 ZGRF1Q86YA3 2104 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 A0A1B0GTH9 108 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 FAM95CA0A1B0GW59 222 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 ANKDD1BA6NHY2 528 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 C19orf84I3L1E1 186 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 ERI3O43414 337 aaKnown RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 HS6ST1O60243 411 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 ITGA10O75578 1167 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 ZFAND5O76080 213 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 TUBB4AP04350 444 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 IFNA16P05015 189 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 SMIM10L1P0DMW3 83 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 TCP1P17987 556 aaKnown RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 POU3F2P20265 443 aaPredicted RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 PTGER1P34995 402 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 RFC3P40938 356 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 PGGT1BP53609 377 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 RIPPLY3P57055 190 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 RAB38P57729 211 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 PLGLB1Q02325 96 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 PPP1R3AQ16821 1122 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 ARHGAP11AQ6P4F7 1023 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 TRIM40Q6P9F5 258 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 TRMT10BQ6PF06 316 aaKnown RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 MEX3BQ6ZN04 569 aaKnown RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 NCCRP1Q6ZVX7 275 aaPredicted RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 CD163Q86VB7 1156 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 GPALPP1Q8IXQ4 340 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 ZNF295-AS1Q8N0V1 137 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 ARMC10Q8N2F6 343 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 TMEM132CQ8N3T6 1108 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 CREB3L4Q8TEY5 395 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 SMIM10Q96HG1 83 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 SEC16BQ96JE7 1060 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 DMRTA2Q96SC8 542 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 PITHD1Q9GZP4 211 aaPredicted RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 CNOT10Q9H9A5 744 aaKnown RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 YARS2Q9Y2Z4 477 aaKnown RBP14.36□□□□□ -0.11
SKA3-204ENST00000462482 ASB1Q9Y576 335 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 CLCA3PQ9Y6N3 262 aa14.36□□□□□ -0.11
SKA3-204ENST00000462482 A8MVJ9 347 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 ACOT7O00154 380 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 CLGNO14967 610 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 ZNHIT1O43257 154 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 TFEBP19484 476 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 KIR3DL1P43629 444 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 DR1Q01658 176 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 TLE4Q04727 773 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 BMPR2Q13873 1038 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 FRG1Q14331 258 aaKnown RBP14.35□□□□□ -0.11
SKA3-204ENST00000462482 SLBPQ14493 270 aaKnown RBP eCLIP14.35□□□□□ -0.11
SKA3-204ENST00000462482 STEAP4Q687X5 459 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 CEP128Q6ZU80 1094 aa14.35□□□□□ -0.11
SKA3-204ENST00000462482 ZNF227Q86WZ6 799 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms