RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GKAP1Q5VSY0 366 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-208ENST00000437607 LIPJQ5W064 366 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 ZNF385CQ66K41 422 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-208ENST00000437607 ATG9BQ674R7 924 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 CGB2Q6NT52 195 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 NXPE4Q6UWF7 544 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 DDIASQ8IXT1 998 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 ADGRF3Q8IZF5 1079 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 CLYBLQ8N0X4 340 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 KRT78Q8N1N4 520 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 TBC1D19Q8N5T2 526 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 L3MBTL4Q8NA19 623 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 METTL6Q8TCB7 284 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 ZNF473Q8WTR7 871 aaKnown RBP11.56□□□□□ -0.56
PTPRF-208ENST00000437607 UBE2E3Q969T4 207 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 REPS1Q96D71 796 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 C19orf60Q96EN9 201 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 TCTN2Q96GX1 697 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 KCNA7Q96RP8 456 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 CCT8L2Q96SF2 557 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 ELAC2Q9BQ52 826 aaKnown RBP11.56□□□□□ -0.56
PTPRF-208ENST00000437607 AIF1LQ9BQI0 150 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 ELOVL6Q9H5J4 265 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 TNFRSF12AQ9NP84 129 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 C1GALT1Q9NS00 363 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 CUEDC1Q9NWM3 386 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-208ENST00000437607 SOHLH2Q9NX45 425 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 SPHK1Q9NYA1 384 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 DCTN4Q9UJW0 460 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 SNX6Q9UNH7 406 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 SH2B3Q9UQQ2 575 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 TRAF6Q9Y4K3 522 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 AKAP9Q99996 3911 aa11.56□□□□□ -0.56
PTPRF-208ENST00000437607 A0A0J9YY10 115 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 A0A1B0GTL3 188 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 WIPF3A6NGB9 483 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 A6NL46 340 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 TMEM150CB9EJG8 249 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 DPM1O60762 260 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 DIAPH2O60879 1101 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 CLDN1O95832 211 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 MSL3P1P0C860 447 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 C1GALT1C1LP0DN25 315 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 ALOX15P16050 662 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-208ENST00000437607 NPPBP16860 134 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 HRH2P25021 359 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 CXCR2P25025 360 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 GRK3P35626 688 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 AQP5P55064 265 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 FOXA1P55317 472 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 REEP5Q00765 189 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 GABPB1Q06547 395 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-208ENST00000437607 SF3A3Q12874 501 aaKnown RBP eCLIP11.55□□□□□ -0.565e-6■■■■■ 39.5
PTPRF-208ENST00000437607 ATP1A4Q13733 1029 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 DOC2AQ14183 400 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 SF1Q15637 639 aaKnown RBP11.55□□□□□ -0.56
PTPRF-208ENST00000437607 CPSF6Q16630 551 aaKnown RBP eCLIP11.55□□□□□ -0.56
PTPRF-208ENST00000437607 HIST2H2ACQ16777 129 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-208ENST00000437607 SLC5A12Q1EHB4 618 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 ZNF787Q6DD87 383 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 HIST2H2AA3Q6FI13 130 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 SPESP1Q6UW49 350 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 SLCO4C1Q6ZQN7 724 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 ACAD11Q709F0 780 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 OR2L3Q8NG85 312 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 PNPLA2Q96AD5 504 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 CLIP3Q96DZ5 547 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 SMAD5Q99717 465 aaKnown RBP11.55□□□□□ -0.56
PTPRF-208ENST00000437607 TMEM120AQ9BXJ8 343 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 NUF2Q9BZD4 464 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 ACTR5Q9H9F9 607 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-208ENST00000437607 ZNF225Q9UK10 706 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 RNF11Q9Y3C5 154 aa11.55□□□□□ -0.56
PTPRF-208ENST00000437607 KCNE1BA0A087WTH5 132 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 H3BMH7 237 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PIP5K1BO14986 540 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 HCRTR1O43613 425 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 SNX3O60493 162 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 KLF7O75840 302 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 FGF4P08620 206 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PCNAP12004 261 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PVRP15151 417 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 CDH3P22223 829 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 VARSP26640 1264 aaKnown RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 HTR6P50406 440 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 ARFIP2P53365 341 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PRDX1Q06830 199 aaKnown RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PCDH1Q08174 1060 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 RAPSNQ13702 412 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 NCF4Q15080 339 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 ZRSR2Q15696 482 aaKnown RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 IMPG1Q17R60 797 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 PLEKHN1Q494U1 663 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 CATSPEREQ5SY80 951 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 C10orf62Q5T681 223 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-208ENST00000437607 MED27Q6P2C8 311 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 MED25Q71SY5 747 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 TRIM73Q86UV7 250 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 TMEM151BQ8IW70 566 aa11.54□□□□□ -0.56
PTPRF-208ENST00000437607 ANKS4BQ8N8V4 417 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms