RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF821O75541 412 aaPredicted RBP6.96□□□□□ -1.29
VPS53-204ENST00000437048 CREG1O75629 220 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 HK3P52790 923 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 INHBEP58166 350 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 RAB40BQ12829 278 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 TCEANCQ8N8B7 351 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 LIN37Q96GY3 246 aaPredicted RBP6.96□□□□□ -1.29
VPS53-204ENST00000437048 TXNDC15Q96J42 360 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 TTYH2Q9BSA4 534 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 EMC7Q9NPA0 242 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 GPRC5BQ9NZH0 403 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 SLIT2O94813 1529 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 UGDHO60701 494 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 CDK3Q00526 305 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 NAT8LQ8N9F0 302 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 PCDHGA8Q9Y5G5 932 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 MAFO75444 373 aaPredicted RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 OAS1P00973 400 aaKnown RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 COL6A1P12109 1028 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 LHCGRP22888 699 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 POLR2HP52434 150 aaKnown RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 MSANTD2Q6P1R3 559 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 SAMD12Q8N8I0 201 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 HSPBAP1Q96EW2 488 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 PSD2Q9BQI7 771 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 CACNG6Q9BXT2 260 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 SLC28A3Q9HAS3 691 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 ARL5AQ9Y689 179 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 TEX264Q9Y6I9 313 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 SPATA31A1Q5TZJ5 1347 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 C9IYK1 514 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 RAB3BP20337 219 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 BTG1P62324 171 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 RIN1Q13671 783 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 SCARF1Q14162 830 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 TMEM41BQ5BJD5 291 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 PDSS1Q5T2R2 415 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 DOK6Q6PKX4 331 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 ARL9Q6T311 187 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 ABHD13Q7L211 337 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 ILDR1Q86SU0 546 aaPredicted RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 LNX1Q8TBB1 728 aaPredicted RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 WFIKKN2Q8TEU8 576 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 SLC25A21Q9BQT8 299 aaPredicted RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 G6PC3Q9BUM1 346 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 HIPK2Q9H2X6 1198 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 CERS4Q9HA82 394 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 MAFFQ9ULX9 164 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 KLK4Q9Y5K2 254 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 MMP20O60882 483 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 SOCS5O75159 536 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 CSF3P09919 207 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 IFI30P13284 250 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 PPT1P50897 306 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 MZT1Q08AG7 82 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 GJB7Q6PEY0 223 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 PGBD3Q8N328 593 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 ACBD7Q8N6N7 88 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 NDNFQ8TB73 568 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 NANPQ8TBE9 248 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 CD300LFQ8TDQ1 290 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 UPRTQ96BW1 309 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 AGO3Q9H9G7 860 aaKnown RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 MYOM1P52179 1685 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 COL3A1P02461 1466 aaPredicted RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 E7ESA3 106 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 ITGAMP11215 1152 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 NFYAP23511 347 aaPredicted RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 SSBP1Q04837 148 aaKnown RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 SLC6A19Q695T7 634 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 CEP68Q76N32 757 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 ZNF417Q8TAU3 575 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 HPSE2Q8WWQ2 592 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 FAM212BQ9NTI7 297 aaPredicted RBP6.96□□□□□ -1.3
VPS53-204ENST00000437048 DIP2BQ9P265 1576 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 BLACEA4D250 179 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 IDSP22304 550 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 TAS2R30P59541 319 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 FRS2Q8WU20 508 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 SEMA4DQ92854 862 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 CCM2Q9BSQ5 444 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.96□□□□□ -1.3
VPS53-204ENST00000437048 CWH43Q9H720 699 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 MEAF6Q9HAF1 191 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 PRSS44E7EML9 344 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 BANF1O75531 89 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 NINJ1Q92982 152 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 LRIG1Q96JA1 1093 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 TGM7Q96PF1 710 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 DOHHQ9BU89 302 aa6.96□□□□□ -1.3
VPS53-204ENST00000437048 H3BSA7 217 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 PSMD10O75832 226 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 PGAM2P15259 253 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CTBP1Q13363 440 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 CELF1Q92879 486 aaKnown RBP6.95□□□□□ -1.3
VPS53-204ENST00000437048 PIP5K1AQ99755 562 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 A0A075B6Q4 140 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 MOXD2PA6NHM9 499 aa6.95□□□□□ -1.3
VPS53-204ENST00000437048 ITPKAP23677 461 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms