RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 PRSS53Q2L4Q9 553 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 DEFB115Q30KQ5 88 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 SOWAHCQ53LP3 525 aaPredicted RBP11.31□□□□□ -0.6
CD44-209ENST00000433892 DSG4Q86SJ6 1040 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 ZNF605Q86T29 641 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 SLC22A16Q86VW1 577 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 TRAPPC5Q8IUR0 188 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 MMP21Q8N119 569 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 ZNF740Q8NDX6 193 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 ZNF675Q8TD23 568 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 C16orf78Q8WTQ4 265 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 ZNF296Q8WUU4 475 aaPredicted RBP11.31□□□□□ -0.6
CD44-209ENST00000433892 GTPBP3Q969Y2 492 aaKnown RBP11.31□□□□□ -0.6
CD44-209ENST00000433892 RNF167Q9H6Y7 350 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 PLCXD1Q9NUJ7 323 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 NFKBIL1Q9UBC1 381 aaPredicted RBP11.31□□□□□ -0.6
CD44-209ENST00000433892 POFUT2Q9Y2G5 429 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 DYRK1BQ9Y463 629 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 AP1M2Q9Y6Q5 423 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 UNC80Q8N2C7 3258 aa11.31□□□□□ -0.6
CD44-209ENST00000433892 PRAMEF33A0A0G2JMD5 474 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 LOC100506127A0A0U1RQW1 187 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TSPAN11A1L157 253 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 PRAMEF10O60809 474 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 GPR37L1O60883 481 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 C1GALT1C1LP0DN25 315 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 DBTP11182 482 aaKnown RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 GRK5P34947 590 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 SOAT1P35610 550 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 PPM1AP35813 382 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 PXNP49023 591 aaPredicted RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 EIF2B2P49770 351 aaKnown RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 PPP5CP53041 499 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 CRISP3P54108 245 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 FCHO2Q0JRZ9 810 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 DMC1Q14565 340 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 ZNF404Q494X3 552 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 MLIPQ5VWP3 458 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.3□□□□□ -0.6
CD44-209ENST00000433892 STX19Q8N4C7 294 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 SORBS1Q9BX66 1292 aaKnown RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 CFHR5Q9BXR6 569 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 C6orf62Q9GZU0 229 aaPredicted RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 OR2AG1Q9H205 316 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 EHD1Q9H4M9 534 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TMEM39AQ9NV64 488 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 IMPAD1Q9NX62 359 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 RHCGQ9UBD6 479 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 RAB23Q9ULC3 237 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 ATP11BQ9Y2G3 1177 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 MYO7AQ13402 2215 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 ABHD14A-ACY1A0A1B0GW23 586 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 FOXE1O00358 373 aaPredicted RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 KPNA3O00505 521 aaPredicted RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 TLL1O43897 1013 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 MOSPD3O75425 235 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 PTHP01270 115 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 ADH1AP07327 375 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 CD40LGP29965 261 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 DGKEP52429 567 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 RPS3AP61247 264 aaKnown RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 WDR5P61964 334 aaKnown RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 TUBA1BP68363 451 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TAP2Q03519 686 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 EEF1A2Q05639 463 aaKnown RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 RBBP4Q09028 425 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 ST3GAL4Q11206 333 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 PDE7AQ13946 482 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 COLEC12Q5KU26 742 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 ERAP2Q6P179 960 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TRIM40Q6P9F5 258 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TUBA1AQ71U36 451 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 PARS2Q7L3T8 475 aaKnown RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 SLC46A3Q7Z3Q1 461 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 LAS2Q8IYD9 372 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 NLGN4XQ8N0W4 816 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 OXR1Q8N573 874 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 C2orf73Q8N5S3 287 aaPredicted RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 MINDY2Q8NBR6 621 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 VN1R2Q8NFZ6 395 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 EFCAB11Q9BUY7 163 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 RNF208Q9H0X6 261 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TMEM38AQ9H6F2 299 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 ZNF556Q9HAH1 456 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 PAK6Q9NQU5 681 aaPredicted RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 ABCB10Q9NRK6 738 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 ACER3Q9NUN7 267 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 FKBP14Q9NWM8 211 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 MS4A12Q9NXJ0 267 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TAS2R16Q9NYV7 291 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TAS2R9Q9NYW1 312 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TBX21Q9UL17 535 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 TRIM17Q9Y577 477 aa11.3□□□□□ -0.6
CD44-209ENST00000433892 HELZP42694 1942 aaKnown RBP11.3□□□□□ -0.6
CD44-209ENST00000433892 A0A1W2PRB8 838 aa11.29□□□□□ -0.6
CD44-209ENST00000433892 ALOX5P09917 674 aa11.29□□□□□ -0.6
CD44-209ENST00000433892 HSMCR30P0CW71 290 aa11.29□□□□□ -0.6
CD44-209ENST00000433892 ADORA3P0DMS8 318 aa11.29□□□□□ -0.6
CD44-209ENST00000433892 ITGA2P17301 1181 aa11.29□□□□□ -0.6
CD44-209ENST00000433892 GABRB1P18505 474 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms