RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CTSFQ9UBX1 484 aa11.76□□□□□ -0.53
USP40-205ENST00000430158 NDOR1Q9UHB4 597 aa11.76□□□□□ -0.53
USP40-205ENST00000430158 CDC14AQ9UNH5 594 aa11.76□□□□□ -0.53
USP40-205ENST00000430158 FARSAQ9Y285 508 aaKnown RBP11.76□□□□□ -0.53
USP40-205ENST00000430158 MAP4K5Q9Y4K4 846 aa11.76□□□□□ -0.53
USP40-205ENST00000430158 MRPS18BQ9Y676 258 aaKnown RBP11.76□□□□□ -0.53
USP40-205ENST00000430158 HMGB1P1B2RPK0 211 aaPredicted RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 H3BQF6 201 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 RRP8O43159 456 aaKnown RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 ERI3O43414 337 aaKnown RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 ITM2AO43736 263 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 RDH16O75452 317 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 PDYNP01213 254 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 UMODP07911 640 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 CHN1P15882 459 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 PTX3P26022 381 aaPredicted RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 BSGP35613 385 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 SERPINB5P36952 375 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 ARFIP1P53367 373 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 RPS18P62269 152 aaKnown RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 MAT1AQ00266 395 aaKnown RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 ASPHQ12797 758 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 DDX39BQ13838 428 aaKnown RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 CRTC2Q53ET0 693 aaPredicted RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 TMEM35AQ53FP2 167 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 CFAP157Q5JU67 520 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 ABHD13Q7L211 337 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 CUZD1Q86UP6 607 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 LAPTM4BQ86VI4 370 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 ZC3H7AQ8IWR0 971 aaKnown RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 ANKRD42Q8N9B4 389 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 METTL6Q8TCB7 284 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 ADAMTS17Q8TE56 1095 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 MTFMTQ96DP5 389 aaKnown RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 MMABQ96EY8 250 aaPredicted RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 C11orf24Q96F05 449 aaPredicted RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 SORT1Q99523 831 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 SLC7A5P2Q9GIP4 190 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 TUBB1Q9H4B7 451 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 ACTL8Q9H568 366 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 GPN2Q9H9Y4 310 aaPredicted RBP11.75□□□□□ -0.53
USP40-205ENST00000430158 ANKHQ9HCJ1 492 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 KCMF1Q9P0J7 381 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 HAO1Q9UJM8 370 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 TCFL5Q9UL49 500 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 CCL27Q9Y4X3 112 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 TIMM22Q9Y584 194 aa11.75□□□□□ -0.53
USP40-205ENST00000430158 A0A0G2JN53 185 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 WDR91A4D1P6 747 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 URADA6NGE7 173 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 ZNF860A6NHJ4 632 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 RTCAO00442 366 aaKnown RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 PLPP1O14494 284 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 ATP8B1O43520 1251 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 CHST10O43529 356 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 SH3BGRLO75368 114 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 LYPLA1O75608 230 aaPredicted RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 CREG1O75629 220 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 SEMA3DO95025 777 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 BMP10O95393 424 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 SERPINE1P05121 402 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 FURINP09958 794 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 PIM1P11309 404 aaPredicted RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 BGNP21810 368 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 FBLP22087 321 aaKnown RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 ATP5A1P25705 553 aaKnown RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 SERPINB3P29508 390 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 AVPR1BP47901 424 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 PLA2G16P53816 162 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 BTN3A2P78410 334 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 ZNF33BQ06732 778 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 TBL3Q12788 808 aaKnown RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 IL10RAQ13651 578 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 ABRAXAS2Q15018 415 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 CHI3L2Q15782 390 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 VWA2Q5GFL6 755 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 MLIPQ5VWP3 458 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 KANK2Q63ZY3 851 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 RNF165Q6ZSG1 346 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 CHSY3Q70JA7 882 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 TRIM46Q7Z4K8 759 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 CA13Q8N1Q1 262 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 OR2Y1Q8NGV0 311 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 STT3BQ8TCJ2 826 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 CCT6BQ92526 530 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 COL26A1Q96A83 441 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 C17orf62Q9BQA9 187 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 TBCDQ9BTW9 1192 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 SORBS1Q9BX66 1292 aaKnown RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 ACPTQ9BZG2 426 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 SHCBP1LQ9BZQ2 653 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 DDX31Q9H8H2 851 aaKnown RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 BRF2Q9HAW0 419 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 MKKSQ9NPJ1 570 aaPredicted RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 LANCL2Q9NS86 450 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 RYDENQ9NUL5 291 aaKnown RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 IFT80Q9P2H3 777 aaPredicted RBP11.74□□□□□ -0.53
USP40-205ENST00000430158 KCND3Q9UK17 655 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 SNX6Q9UNH7 406 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 CHD6Q8TD26 2715 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms