RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.27□□□□□ -0.76
USP54-204ENST00000422491 DDI2Q5TDH0 399 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 KLHL17Q6TDP4 642 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 ABI3BPQ7Z7G0 1075 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 SLC34A3Q8N130 599 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 CSGALNACT1Q8TDX6 532 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 DNAJA4Q8WW22 397 aaPredicted RBP10.27□□□□□ -0.76
USP54-204ENST00000422491 TMEM80Q96HE8 168 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 SAMD11Q96NU1 681 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 MARVELD1Q9BSK0 173 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 TRIM45Q9H8W5 580 aaPredicted RBP10.27□□□□□ -0.76
USP54-204ENST00000422491 PAK6Q9NQU5 681 aaPredicted RBP10.27□□□□□ -0.76
USP54-204ENST00000422491 IL17CQ9P0M4 197 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 ELF5Q9UKW6 265 aaPredicted RBP10.27□□□□□ -0.76
USP54-204ENST00000422491 PRSS21Q9Y6M0 314 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 CLCA3PQ9Y6N3 262 aa10.27□□□□□ -0.76
USP54-204ENST00000422491 UPK3BL1B0FP48 263 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 UPK3BL2E5RIL1 263 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 J3KTA2 159 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 SLC25A14O95258 325 aaPredicted RBP10.27□□□□□ -0.77
USP54-204ENST00000422491 IGLV3-27P01718 113 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 HMBSP08397 361 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 GPR15P49685 360 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 MLLT11Q13015 90 aaPredicted RBP10.27□□□□□ -0.77
USP54-204ENST00000422491 IKZF1Q13422 519 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 MADCAM1Q13477 382 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 ZXDCQ2QGD7 858 aaPredicted RBP10.27□□□□□ -0.77
USP54-204ENST00000422491 IFI44LQ53G44 452 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 FRMPD2BQ6IN97 320 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 ZNF782Q6ZMW2 699 aaPredicted RBP10.27□□□□□ -0.77
USP54-204ENST00000422491 SYT12Q8IV01 421 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 CFAP52Q8N1V2 620 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 C1orf52Q8N6N3 182 aaKnown RBP10.27□□□□□ -0.77
USP54-204ENST00000422491 NANOGP1Q8N7R0 232 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 HYLS1Q96M11 299 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 QRFPRQ96P65 431 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 C17orf62Q9BQA9 187 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 POLR2J2Q9GZM3 115 aaKnown RBP10.27□□□□□ -0.77
USP54-204ENST00000422491 SLC32A1Q9H598 525 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 THSD1Q9NS62 852 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 ACER3Q9NUN7 267 aa10.27□□□□□ -0.77
USP54-204ENST00000422491 PCDH7O60245 1069 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 PRMT3O60678 531 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SLC22A5O76082 557 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 OR7A10O76100 309 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 LAMP1P11279 417 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 COX7A2P14406 83 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ARSBP15848 533 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ZNF7P17097 686 aaPredicted RBP10.26□□□□□ -0.77
USP54-204ENST00000422491 APEX1P27695 318 aaKnown RBP10.26□□□□□ -0.77
USP54-204ENST00000422491 PTGS2P35354 604 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 CRISP1P54107 249 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 GAB1Q13480 694 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 TEAD4Q15561 434 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 DGKKQ5KSL6 1271 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 GPRC6AQ5T6X5 926 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 LIPKQ5VXJ0 399 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 MEDAGQ5VYS4 303 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 CERS6Q6ZMG9 384 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SERPINA9Q86WD7 417 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 NAGSQ8N159 534 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 THEM5Q8N1Q8 247 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 CLDN19Q8N6F1 224 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 C2orf69Q8N8R5 385 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 FAM46DQ8NEK8 389 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 GPR137Q96N19 417 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SLC6A18Q96N87 628 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ZIC5Q96T25 663 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 COPS8Q99627 209 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SOSTQ9BQB4 213 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 MND1Q9BWT6 205 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 PPP1R3EQ9H7J1 279 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 PIM2Q9P1W9 311 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 NLKQ9UBE8 527 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 POLHQ9Y253 713 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SLC43A1O75387 559 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 AP2A2O94973 939 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 PRAMEF12O95522 483 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SLC9A3P48764 834 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 HMGA2P52926 109 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 PER3P56645 1201 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ABATP80404 500 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 MGAT3Q09327 533 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 MFSD13AQ14CX5 517 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ZNF467Q7Z7K2 595 aaPredicted RBP10.26□□□□□ -0.77
USP54-204ENST00000422491 ZBTB2Q8N680 514 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 AQP11Q8NBQ7 271 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 C11orf65Q8NCR3 313 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 OR8H1Q8NGG4 311 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 KLHL6Q8WZ60 621 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SH3KBP1Q96B97 665 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 AP2M1Q96CW1 435 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 IL4I1Q96RQ9 567 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ADGRE3Q9BY15 652 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 MAGEH1Q9H213 219 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 GALNT9Q9HCQ5 603 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ENOPH1Q9UHY7 261 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 TMCC3Q9ULS5 477 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SNX11Q9Y5W9 270 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 DSPPQ9NZW4 1301 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms