RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PRDM9Q9NQV7 894 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 PNPLA3Q9NST1 481 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 TAS2R13Q9NYV9 303 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 ZFP69BQ9UJL9 534 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 CLDN16Q9Y5I7 305 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 LIPGQ9Y5X9 500 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 COMMD10Q9Y6G5 202 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 KLRC4-KLRK1H3BQV0 150 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 PSMD12O00232 456 aaPredicted RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 EIF3FO00303 357 aaPredicted RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 WWP2O00308 870 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 CDC7O00311 574 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 FCHO1O14526 889 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 ZNF354AO60765 605 aaPredicted RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 OR2J2O76002 312 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 OR6B1O95007 311 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 CELA3AP09093 270 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 HIST1H2AGP0C0S8 130 aaPredicted RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 RNH1P13489 461 aaKnown RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 HIST1H2ADP20671 130 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 SAT1P21673 171 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 MSX1P28360 303 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 GDF5P43026 501 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 RGS4P49798 205 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 GPR143P51810 404 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 DLX5P56178 289 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 PPIAP62937 165 aaKnown RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 REEP5Q00765 189 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 SP140Q13342 867 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 ZNF460Q14592 562 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 CRYMQ14894 314 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 ZNF750Q32MQ0 723 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 GXYLT1Q4G148 440 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 HECTD2Q5U5R9 776 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 ADNP2Q6IQ32 1131 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 CCDC137Q6PK04 289 aaKnown RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 NXPE4Q6UWF7 544 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 IL20RBQ6UXL0 311 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 ABHD13Q7L211 337 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 TMPRSS11BQ86T26 416 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 TMEM200AQ86VY9 491 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 THOC6Q86W42 341 aaKnown RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 LIX1LQ8IVB5 337 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 ARMC10Q8N2F6 343 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 GPATCH11Q8N954 259 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 FAM47BQ8NA70 645 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 ZFP62Q8NB50 900 aaPredicted RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 B3GNT7Q8NFL0 401 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 OR10Q1Q8NGQ4 319 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 CALML6Q8TD86 181 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 RND1Q92730 232 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 FBXL8Q96CD0 374 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 POM121Q96HA1 1249 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 HIST1H2AHQ96KK5 128 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 HIST1H2AJQ99878 128 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 HAUS8Q9BT25 410 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 FAM167BQ9BTA0 163 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 H2AFJQ9BTM1 129 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 SLC6A16Q9GZN6 736 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 XAB2Q9HCS7 855 aaKnown RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 KCNJ16Q9NPI9 418 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 PLSCR2Q9NRY7 297 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 SLC22A14Q9Y267 594 aa7.54□□□□□ -1.2
VIM-202ENST00000421459 KLF13Q9Y2Y9 288 aaPredicted RBP7.54□□□□□ -1.2
VIM-202ENST00000421459 PKDREJQ9NTG1 2253 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 CCDC168Q8NDH2 2452 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 NPEPPSL1A6NEC2 478 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 USP27XA6NNY8 438 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 FANCGO15287 622 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 TBX6O95947 436 aaPredicted RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 CCDC175P0C221 793 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 PGAM1P18669 254 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 CCND1P24385 295 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 CDC25BP30305 580 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 CHRNB4P30926 498 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 DNAJA1P31689 397 aaKnown RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 HNRNPH1P31943 449 aaKnown RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 SOX3P41225 446 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 SSR4P51571 173 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 CLCN2P51788 898 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 IST1P53990 364 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 IL2P60568 153 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 PLGLB1Q02325 96 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 PDAP1Q13442 181 aaKnown RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 PPP1R3AQ16821 1122 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 FBXO48Q5FWF7 155 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 TEDDM1Q5T9Z0 273 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 RTL6Q6ICC9 239 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 TMEM211Q6ICI0 200 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 ZNF585AQ6P3V2 769 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 TRMT10BQ6PF06 316 aaKnown RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 SBSNQ6UWP8 590 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 STRA8Q7Z7C7 330 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 SCUBE1Q8IWY4 988 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 LMNTD2Q8IXW0 634 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.53□□□□□ -1.2
VIM-202ENST00000421459 POGLUT1Q8NBL1 392 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 PSD4Q8NDX1 1056 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 OR2M7Q8NG81 312 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 OR5M3Q8NGP4 307 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms