RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PDZD2O15018 2839 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 CES2O00748 559 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 TP73O15350 636 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 PRKNO60260 465 aaPredicted RBP10.81□□□□□ -0.68
USP4-204ENST00000416417 CDC40O60508 579 aaKnown RBP eCLIP10.81□□□□□ -0.68
USP4-204ENST00000416417 ZNF24P17028 368 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 CYB561P49447 251 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 MEOX1P50221 254 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 ARL4CP56559 192 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 MGAT5Q09328 741 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 SLBPQ14493 270 aaKnown RBP eCLIP10.81□□□□□ -0.68
USP4-204ENST00000416417 MORF4L2Q15014 288 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.81□□□□□ -0.68
USP4-204ENST00000416417 KRTCAP3Q53RY4 240 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 MTFR2Q6P444 385 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 Q6ZPB1 254 aaPredicted RBP10.81□□□□□ -0.68
USP4-204ENST00000416417 DOLPP1Q86YN1 238 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 ZNF295-AS1Q8N0V1 137 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 FAM98AQ8NCA5 519 aaKnown RBP10.81□□□□□ -0.68
USP4-204ENST00000416417 TRPV3Q8NET8 790 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 SLCO2A1Q92959 643 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 PDLIM5Q96HC4 596 aaKnown RBP10.81□□□□□ -0.68
USP4-204ENST00000416417 TRIM8Q9BZR9 551 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 CTNNAL1Q9UBT7 734 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 ZNF223Q9UK11 482 aaPredicted RBP10.81□□□□□ -0.68
USP4-204ENST00000416417 FBXW2Q9UKT8 454 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 CORO1CQ9ULV4 474 aaPredicted RBP10.81□□□□□ -0.68
USP4-204ENST00000416417 MTO1Q9Y2Z2 717 aaKnown RBP10.81□□□□□ -0.68
USP4-204ENST00000416417 DCHS2Q6V1P9 2916 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 CSMD2Q7Z408 3487 aa10.81□□□□□ -0.68
USP4-204ENST00000416417 ADAM10O14672 748 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 ERI3O43414 337 aaKnown RBP10.8□□□□□ -0.68
USP4-204ENST00000416417 PRAMEF4O60810 478 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 PDE9AO76083 593 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 SERPINA6P08185 405 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 C1GALT1C1LP0DN25 315 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 HLCSP50747 726 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 SMSP52788 366 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 PLA2G16P53816 162 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 KRTAP10-9P60411 292 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 SKP1P63208 163 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 PRAMEF9Q5VWM5 478 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 XKRXQ6PP77 449 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 SLCO4C1Q6ZQN7 724 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 FRA10AC1Q70Z53 315 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 MDGA2Q7Z553 956 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 CREG2Q8IUH2 290 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 SULF2Q8IWU5 870 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 GHDCQ8N2G8 530 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 NKAPQ8N5F7 415 aaKnown RBP10.8□□□□□ -0.68
USP4-204ENST00000416417 HORMAD2Q8N7B1 307 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 APCDD1LQ8NCL9 501 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 NCLNQ969V3 563 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 MTFMTQ96DP5 389 aaKnown RBP10.8□□□□□ -0.68
USP4-204ENST00000416417 CSF3RQ99062 836 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 CHST11Q9NPF2 352 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 ITGB1BP2Q9UKP3 347 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 SNX24Q9Y343 169 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 OARD1Q9Y530 152 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 ASB1Q9Y576 335 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 HRH3Q9Y5N1 445 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 KCNE2Q9Y6J6 123 aa10.8□□□□□ -0.68
USP4-204ENST00000416417 A0A1B0GTH9 108 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 URADA6NGE7 173 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 CXorf49A8MYA2 514 aaPredicted RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 G3V3Y1 287 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TAPBPO15533 448 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 PHGDHO43175 533 aaKnown RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 ZSCAN12O43309 604 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 PEX1O43933 1283 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 HS6ST1O60243 411 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 SH3BGRLO75368 114 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 SEC31AO94979 1220 aaKnown RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 TBX6O95947 436 aaPredicted RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 TCP1P17987 556 aaKnown RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 ELAVL4P26378 380 aaKnown RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 RPL21P46778 160 aaKnown RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 GDF7Q7Z4P5 450 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 VN1R5Q7Z5H4 357 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 KLHDC8AQ8IYD2 350 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 LGI4Q8N135 537 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TMEM125Q96AQ2 219 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 RHBDF1Q96CC6 855 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 MS4A6EQ96DS6 147 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 FAR2Q96K12 515 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 LURAP1Q96LR2 239 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TMEM79Q9BSE2 394 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 GPAMQ9HCL2 828 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 PRTFDC1Q9NRG1 225 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 MOCS1Q9NZB8 636 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 CLDN16Q9Y5I7 305 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 PINLYPA6NC86 204 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 LRIT2A6NDA9 550 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 FCHO1O14526 889 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TFECO14948 347 aaPredicted RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 H2AFYO75367 372 aaKnown RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 ITGA10O75578 1167 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 CLDN14O95500 239 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 MLYCDO95822 493 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TPOP07202 933 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms