RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 LIPKQ5VXJ0 399 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 THOC6Q86W42 341 aaKnown RBP20.11■□□□□ 0.81
CTCF-202ENST00000401394 GPR65Q8IYL9 337 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 OR8J2Q8NGG1 315 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 HUS1BQ8NHY5 278 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 WDR20Q8TBZ3 569 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 CASD1Q96PB1 797 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 OR51B5Q9H339 312 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 MTG2Q9H4K7 406 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 TRPM5Q9NZQ8 1165 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 ARHGEF33A8MVX0 844 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 SEMA7AO75326 666 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 RECKO95980 971 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 TLE2Q04725 743 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 LRRC74AQ0VAA2 488 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 ZFP69Q49AA0 526 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 CHST9Q7L1S5 443 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 LRRC70Q7Z2Q7 622 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 C2orf69Q8N8R5 385 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 C11orf65Q8NCR3 313 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 CSGALNACT1Q8TDX6 532 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 FCGR1BQ92637 280 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 OTUB1Q96FW1 271 aaPredicted RBP20.1■□□□□ 0.81
CTCF-202ENST00000401394 SLC35A5Q9BS91 424 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 ZDHHC6Q9H6R6 413 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 SMURF1Q9HCE7 757 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 ZDHHC3Q9NYG2 299 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 C5AR2Q9P296 337 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 KLHL20Q9Y2M5 609 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 V9GYH0 126 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 EOMESO95936 686 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 GALTP07902 379 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 SDHBP21912 280 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 MAPK1P28482 360 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 GPR50Q13585 617 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 SCARB2Q14108 478 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 ARMC4Q5T2S8 1044 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 ZNF517Q6ZMY9 492 aaPredicted RBP20.1■□□□□ 0.81
CTCF-202ENST00000401394 GALNT12Q8IXK2 581 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 SYT14Q8NB59 555 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 WDR48Q8TAF3 677 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 ABCB9Q9NP78 766 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 CTPS2Q9NRF8 586 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 PADI2Q9Y2J8 665 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 DOCK6Q96HP0 2047 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 MYO7AQ13402 2215 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 A0A0B4J293 547 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 MGAT4DA6NG13 374 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 SMLR1H3BR10 107 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 FFAR1O14842 300 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 SLC16A8O95907 504 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 PDHA2P29803 388 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 SOAT1P35610 550 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 ERICH5Q6P6B1 374 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 DEPDC4Q8N2C3 294 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 CHST14Q8NCH0 376 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 RNF31Q96EP0 1072 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 VN1R3Q9BXE9 311 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.1■□□□□ 0.81
CTCF-202ENST00000401394 CARD8Q9Y2G2 431 aa20.1■□□□□ 0.81
CTCF-202ENST00000401394 TBKBP1A7MCY6 615 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 CYP17A1P05093 508 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 WEE1P30291 646 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 PRIM2P49643 509 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 ZNF157P51786 506 aaPredicted RBP20.09■□□□□ 0.81
CTCF-202ENST00000401394 LMAN2Q12907 356 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 SEC23BQ15437 767 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 TUBA3EQ6PEY2 450 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 TMEM150AQ86TG1 271 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 DNAJB8Q8NHS0 232 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 UBASH3BQ8TF42 649 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 TTLL2Q9BWV7 592 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 CWH43Q9H720 699 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 PLCXD1Q9NUJ7 323 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 CCDC59Q9P031 241 aaKnown RBP20.09■□□□□ 0.81
CTCF-202ENST00000401394 EFCAB10A6NFE3 127 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 PRKCZQ05513 592 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 VEZF1Q14119 521 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 REM2Q8IYK8 340 aaPredicted RBP20.09■□□□□ 0.81
CTCF-202ENST00000401394 ZNF740Q8NDX6 193 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 DEPDC7Q96QD5 511 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 PHOX2BQ99453 314 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 BRD9Q9H8M2 597 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 NMNAT1Q9HAN9 279 aaPredicted RBP20.09■□□□□ 0.81
CTCF-202ENST00000401394 TMEM39AQ9NV64 488 aa20.09■□□□□ 0.81
CTCF-202ENST00000401394 MEIOCA2RUB1 952 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 SNX4O95219 450 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 HBQ1P09105 142 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 ZNF8P17098 575 aaPredicted RBP20.08■□□□□ 0.81
CTCF-202ENST00000401394 SOX6P35712 828 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 LIM2P55344 173 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 DEFA1P59665 94 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 DEFA3P59666 94 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 CCDC58Q4VC31 144 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 BRAT1Q6PJG6 821 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 PGBD3Q8N328 593 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 SPNS1Q9H2V7 528 aa20.08■□□□□ 0.81
CTCF-202ENST00000401394 FAM120CQ9NX05 1096 aaKnown RBP20.08■□□□□ 0.81
CTCF-202ENST00000401394 CCRL2O00421 344 aa20.08■□□□□ 0.8
CTCF-202ENST00000401394 NTN1O95631 604 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms