RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KCNK10P57789 538 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 RAB8AP61006 207 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 CFHR1Q03591 330 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 FOXM1Q08050 763 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 TBL3Q12788 808 aaKnown RBP13.52□□□□□ -0.25
SKA1-202ENST00000398452 KLF10Q13118 480 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 SLC9A5Q14940 896 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 TRIP6Q15654 476 aaKnown RBP13.52□□□□□ -0.25
SKA1-202ENST00000398452 MUM1Q2TAK8 710 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 AGKQ53H12 422 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 GARNL3Q5VVW2 1013 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 ZNF771Q7L3S4 317 aaPredicted RBP13.52□□□□□ -0.25
SKA1-202ENST00000398452 OR4N4Q8N0Y3 316 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 TMEM132CQ8N3T6 1108 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 FITM2Q8N6M3 262 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 GLB1L3Q8NCI6 653 aaPredicted RBP13.52□□□□□ -0.25
SKA1-202ENST00000398452 AGBL5Q8NDL9 886 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 TM4SF19Q96DZ7 209 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 MACROD1Q9BQ69 325 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 NDC1Q9BTX1 674 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 FAIM2Q9BWQ8 316 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 SLC6A16Q9GZN6 736 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 LYARQ9NX58 379 aaKnown RBP13.52□□□□□ -0.25
SKA1-202ENST00000398452 SIRT5Q9NXA8 310 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 CLCA2Q9UQC9 943 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 ARID1BQ8NFD5 2236 aaPredicted RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 SPAARA0A1B0GVQ0 90 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 RTCAO00442 366 aaKnown RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 PLPP1O14494 284 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 B3GALT2O43825 422 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 PRMT3O60678 531 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 CBFA2T3O75081 653 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 ATP5HO75947 161 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 ZNF888P0CJ79 500 aaPredicted RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 ESRRAP11474 423 aaPredicted RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 PIK3R1P27986 724 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 PRDX6P30041 224 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 HNRNPH1P31943 449 aaKnown RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 AVPR1BP47901 424 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 ARSFP54793 590 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 TRA2BP62995 288 aaKnown RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 BTN3A2P78410 334 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 MXRA7P84157 204 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 STX5Q13190 355 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 CYLC2Q14093 348 aaPredicted RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 HEPACAMQ14CZ8 416 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 KIAA0040Q15053 153 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 ZSCAN26Q16670 478 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 HKDC1Q2TB90 917 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 ADPRMQ3LIE5 342 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 MMEL1Q495T6 779 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 YOD1Q5VVQ6 348 aaPredicted RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 GALNT18Q6P9A2 607 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 TLDC1Q6P9B6 456 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 ABHD17CQ6PCB6 329 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 ARHGAP22Q7Z5H3 698 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 R3HCC1LQ7Z5L2 792 aaKnown RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 KCT2Q8NC54 265 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 OR8K5Q8NH50 307 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 TSSK3Q96PN8 268 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 BRINP2Q9C0B6 783 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 KLHL31Q9H511 634 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 WDR41Q9HAD4 459 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 MIEF1Q9NQG6 463 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 SDR39U1Q9NRG7 319 aaPredicted RBP13.51□□□□□ -0.25
SKA1-202ENST00000398452 FGF21Q9NSA1 209 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 TXLNGQ9NUQ3 528 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 CCDC167Q9P0B6 97 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 PDP2Q9P2J9 529 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 RARRES3Q9UL19 164 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 GPR45Q9Y5Y3 372 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 SLC22A7Q9Y694 548 aa13.51□□□□□ -0.25
SKA1-202ENST00000398452 COL5A1P20908 1838 aaPredicted RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 CEP295Q9C0D2 2601 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 A0A0G2JN53 185 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 DYTNA2CJ06 578 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 HYKKA2RU49 373 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 NR5A2O00482 541 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 ANGPT2O15123 496 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 HNRNPCL1O60812 293 aaKnown RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 MSL3P1P0C860 447 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 SDC1P18827 310 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 PRPS1L1P21108 318 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 HIST1H1TP22492 207 aaPredicted RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 TLX1P31314 330 aaPredicted RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 BSGP35613 385 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 RASSF2P50749 326 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 CLDN8P56748 225 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 KCNAB1Q14722 419 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 KRT72Q14CN4 511 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 GPR19Q15760 415 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 DPY19L1Q2PZI1 675 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 DEFB134Q4QY38 66 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 FAM91A1Q658Y4 838 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 PAOXQ6QHF9 649 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 ZNF574Q6ZN55 896 aaPredicted RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 IKBIPQ70UQ0 350 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 BPHLQ86WA6 291 aaPredicted RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 ZCCHC7Q8N3Z6 543 aaKnown RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 RCBTB1Q8NDN9 531 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms