RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 CFAP20Q9Y6A4 193 aaKnown RBP22.08■■□□□ 1.13
VPS16-201ENST00000380443 CCDC160A6NGH7 325 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 ZNF701M0R085 212 aaPredicted RBP22.08■■□□□ 1.12
VPS16-201ENST00000380443 HS6ST1O60243 411 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 CLIC3O95833 236 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 FUCA1P04066 466 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 HOXB2P14652 356 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 CDH2P19022 906 aaPredicted RBP22.08■■□□□ 1.12
VPS16-201ENST00000380443 DRD1P21728 446 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 CTHP32929 405 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 CRATP43155 626 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 MAPK12P53778 367 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 IST1P53990 364 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 ITGA1P56199 1179 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 KIAA1024LP59773 190 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 MRPS21P82921 87 aaKnown RBP22.08■■□□□ 1.12
VPS16-201ENST00000380443 MC1RQ01726 317 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 LSAMPQ13449 338 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 KRT33BQ14525 404 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 MLF2Q15773 248 aaPredicted RBP22.08■■□□□ 1.12
VPS16-201ENST00000380443 TMEM35AQ53FP2 167 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 DDX59Q5T1V6 619 aaKnown RBP eCLIP22.08■■□□□ 1.12
VPS16-201ENST00000380443 NUDT13Q86X67 352 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 ANKRD53Q8N9V6 530 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 IL17RCQ8NAC3 791 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 OR5P2Q8WZ92 322 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 HDAC2Q92769 488 aaKnown RBP22.08■■□□□ 1.12
VPS16-201ENST00000380443 MBOAT4Q96T53 435 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 DOHHQ9BU89 302 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 CUEDC1Q9NWM3 386 aaPredicted RBP22.08■■□□□ 1.12
VPS16-201ENST00000380443 PADI2Q9Y2J8 665 aa22.08■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3DA0A087WVF3 549 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3IA0A087WXS9 549 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3EA0A087X179 549 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3KA0A087X1G2 549 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TRBC2A0A5B9 178 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3FA6NER0 549 aaPredicted RBP22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3LB9A6J9 549 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 H3BQ06 376 aaPredicted RBP22.07■■□□□ 1.12
VPS16-201ENST00000380443 GBAP04062 536 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3HP0C7X1 549 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 EFNA1P20827 205 aaPredicted RBP22.07■■□□□ 1.12
VPS16-201ENST00000380443 DLX2Q07687 328 aaPredicted RBP22.07■■□□□ 1.12
VPS16-201ENST00000380443 PUS10Q3MIT2 529 aaKnown RBP22.07■■□□□ 1.12
VPS16-201ENST00000380443 LEXMQ3ZCV2 418 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 ZBED5Q49AG3 693 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3GQ6DHY5 549 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3CQ6IPX1 549 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TMEM179BQ7Z7N9 219 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D3Q8IZP1 549 aaPredicted RBP22.07■■□□□ 1.12
VPS16-201ENST00000380443 TBC1D19Q8N5T2 526 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 KLK6Q92876 244 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 ZNF717Q9BY31 904 aaPredicted RBP22.07■■□□□ 1.12
VPS16-201ENST00000380443 CD207Q9UJ71 328 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 BLOC1S6Q9UL45 172 aa22.07■■□□□ 1.12
VPS16-201ENST00000380443 A0A1W2PQF6 199 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 ENO4A6NNW6 628 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 H7BY64 318 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 UGT2B11O75310 529 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 TBX6O95947 436 aaPredicted RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 NTRK1P04629 796 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 RYKP34925 604 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 CHI3L1P36222 383 aaPredicted RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 CDK9P50750 372 aaKnown RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 SELENOWP63302 87 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 CSNK1G2P78368 415 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 MPEG1Q2M385 716 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 GPR141Q7Z602 305 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 ZC3H7AQ8IWR0 971 aaKnown RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 LINC01555Q8NAE3 123 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 LZICQ8WZA0 190 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 TM4SF18Q96CE8 201 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 MSLNLQ96KJ4 702 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 PRAP1Q96NZ9 151 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 TUBA1CQ9BQE3 449 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 NLNQ9BYT8 704 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 SLC6A16Q9GZN6 736 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 C8orf33Q9H7E9 229 aaPredicted RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 REEP1Q9H902 201 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 C1GALT1Q9NS00 363 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 TMEM184CQ9NVA4 438 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 RSL24D1Q9UHA3 163 aaKnown RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 HSPE1-MOB4S4R3N1 261 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 LOC100130705A0A1B0GUX0 176 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 ADAM23O75077 832 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 C1QCP02747 245 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 NDUFS1P28331 727 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 GRK3P35626 688 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 PRIM2P49643 509 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 CDH15P55291 814 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 TPD52P55327 224 aaPredicted RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 KCNAB2Q13303 367 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 PLCL1Q15111 1095 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 IER5LQ5T953 404 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 CIDECQ96AQ7 238 aaPredicted RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 F2RL3Q96RI0 385 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 ZNF347Q96SE7 839 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 EPYCQ99645 322 aa22.06■■□□□ 1.12
VPS16-201ENST00000380443 SOX17Q9H6I2 414 aaPredicted RBP22.06■■□□□ 1.12
VPS16-201ENST00000380443 IMP3Q9NV31 184 aaKnown RBP22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms