RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 PFDN4Q9NQP4 134 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 NUDT4Q9NZJ9 180 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 TMEM181Q9P2C4 612 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 EPS15L1Q9UBC2 864 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 DNMT3BQ9UBC3 853 aaKnown RBP4.65□□□□□ -1.67
USP48-202ENST00000374730 ABCD2Q9UBJ2 740 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 LHX3Q9UBR4 397 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 CD300AQ9UGN4 299 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 SUFUQ9UMX1 484 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 NDUFAF1Q9Y375 327 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 FIS1Q9Y3D6 152 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 MTF2Q9Y483 593 aaPredicted RBP4.65□□□□□ -1.67
USP48-202ENST00000374730 YIPF1Q9Y548 306 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 PCDHGB6Q9Y5F9 930 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 RAI2Q9Y5P3 530 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 PTPRSQ13332 1948 aa4.65□□□□□ -1.67
USP48-202ENST00000374730 MTCL1Q9Y4B5 1905 aaKnown RBP4.65□□□□□ -1.67
USP48-202ENST00000374730 ZFC3H1O60293 1989 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 A0A087WV62 115 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 A0A0J9YYE9 177 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CXorf51AA0A1B0GTR3 108 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 TYW5A2RUC4 315 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 AQP12BA6NM10 295 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 EIF4E1BA6NMX2 242 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 SUPT3HB4E1H0 165 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 ANKRD66B4E2M5 251 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 J3KRW8 73 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 M0R3H8 397 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 FXYD1O00168 92 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 PIP5K1BO14986 540 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 STX7O15400 261 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 AHCYL1O43865 530 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 MOSPD3O75425 235 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 SUPT3HO75486 399 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 SIX3O95343 332 aaPredicted RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 SEC24AO95486 1093 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 MLYCDO95822 493 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 TSPAN12O95859 305 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CD160O95971 181 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 PIRTP0C851 137 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 UBTFL6P0CB48 400 aaPredicted RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 PRSS56P0CW18 603 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 HSPA8P11142 646 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 HSD17B1P14061 328 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 IDO1P14902 403 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 ARSAP15289 507 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 VCLP18206 1134 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 LBPP18428 481 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 ITGB6P18564 788 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 RPS3P23396 243 aaKnown RBP eCLIP4.64□□□□□ -1.67
USP48-202ENST00000374730 TNFSF4P23510 183 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 EEF1DP29692 281 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 SLC7A1P30825 629 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 FMO4P31512 558 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 OR1D2P34982 312 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 PTGER3P43115 390 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CSNK1DP48730 415 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 ALDH7A1P49419 539 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 SGSHP51688 502 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CDH13P55290 713 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 AP1S1P61966 158 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 E2F1Q01094 437 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CREB5Q02930 508 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CACNG1Q06432 222 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 BNIP2Q12982 314 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 PLD1Q13393 1074 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 VEPH1Q14D04 833 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 ARHGEF6Q15052 776 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 PDK3Q15120 406 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CNN3Q15417 329 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 PFKFB4Q16877 469 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CTSL3PQ5NE16 218 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 C6orf10Q5SRN2 563 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 FCRL6Q6DN72 434 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 UGT3A1Q6NUS8 523 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 UGT2A3Q6UWM9 527 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 RNF165Q6ZSG1 346 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 RPS27LQ71UM5 84 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 SPATA19Q7Z5L4 167 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 SPATA24Q86W54 205 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 SFTPA1Q8IWL2 248 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 AQP12AQ8IXF9 295 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 FAM217AQ8IXS0 508 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 GPR65Q8IYL9 337 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 RYBPQ8N488 228 aaPredicted RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 MINDY1Q8N5J2 469 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 PCDH20Q8N6Y1 951 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 DCAF4L2Q8NA75 395 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 LPCAT1Q8NF37 534 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 OR56A4Q8NGH8 313 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 OR9I1Q8NGQ6 314 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 ZNF461Q8TAF7 563 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CD200R1Q8TD46 325 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 EXT2Q93063 718 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 ZUFSPQ96AP4 578 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 APIPQ96GX9 242 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 PDLIM5Q96HC4 596 aaKnown RBP4.64□□□□□ -1.67
USP48-202ENST00000374730 TMEM41AQ96HV5 264 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 IGSF21Q96ID5 467 aa4.64□□□□□ -1.67
USP48-202ENST00000374730 CAPNS2Q96L46 248 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms