RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 GALNT6Q8NCL4 622 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 GFM2Q969S9 779 aaKnown RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 LIN37Q96GY3 246 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 MAPKAP1Q9BPZ7 522 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 TMEM121BQ9BXQ6 578 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 FBXO8Q9NRD0 319 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 HCN3Q9P1Z3 774 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 HEY2Q9UBP5 337 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 CTSFQ9UBX1 484 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 MRPS18BQ9Y676 258 aaKnown RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 USH1CQ9Y6N9 552 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 A0A1W2PR48 441 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 CDRT15L2A8MXV6 281 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 MEN1O00255 615 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 FOXE1O00358 373 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 HDAC3O15379 428 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 SRPX2O60687 465 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 CLEC3AO75596 197 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 SERPINA6P08185 405 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ATP5A1P25705 553 aaKnown RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 IL12AP29459 219 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 PPP2R1BP30154 601 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 HMOX2P30519 316 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 HNRNPH2P55795 449 aaKnown RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 PHC1P78364 1004 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 PUM1Q14671 1186 aaKnown RBP eCLIP3.81□□□□□ -1.8
LIG4-201ENST00000356922 MPEG1Q2M385 716 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 AP5B1Q2VPB7 878 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 PPP1R3BQ86XI6 285 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 OR4N5Q8IXE1 308 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ACOT4Q8N9L9 421 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 OR9I1Q8NGQ6 314 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 NT5CQ8TCD5 201 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 C19orf60Q96EN9 201 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 NAF1Q96HR8 494 aaKnown RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 MAELQ96JY0 434 aaKnown RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 TMEM74Q96NL1 305 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ELAC2Q9BQ52 826 aaKnown RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 ULBP3Q9BZM4 244 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 NT5DC2Q9H857 520 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ANKRA2Q9H9E1 313 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 MEAF6Q9HAF1 191 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ENAMQ9NRM1 1142 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 CUTCQ9NTM9 273 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 VPS29Q9UBQ0 182 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 NDOR1Q9UHB4 597 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 IL17BQ9UHF5 180 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 TMCO1Q9UM00 188 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 A0A0G2JND7 137 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 E9PBE3 544 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 TAF4O00268 1085 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ANKRD28O15084 1053 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 TLX3O43711 291 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 KLHL41O60662 606 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 GALR3O60755 368 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 H2AFYO75367 372 aaKnown RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 KLF7O75840 302 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 STK17BO94768 372 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 LRATO95237 230 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 G6PDP11413 515 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 EFNA1P20827 205 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 PIK3CBP42338 1070 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ITGA1P56199 1179 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ASPHQ12797 758 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 TRA2AQ13595 282 aaKnown RBP eCLIP3.81□□□□□ -1.8
LIG4-201ENST00000356922 PWP1Q13610 501 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 SPDYAQ5MJ70 313 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ATG16L1Q676U5 607 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 DGAT2L6Q6ZPD8 337 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 LSRQ86X29 649 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 KMT5CQ86Y97 462 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 KRT78Q8N1N4 520 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 OR2L5Q8NG80 312 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 MMABQ96EY8 250 aaPredicted RBP3.81□□□□□ -1.8
LIG4-201ENST00000356922 CHST8Q9H2A9 424 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 MID2Q9UJV3 735 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 ASB4Q9Y574 426 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 AK5Q9Y6K8 562 aa3.81□□□□□ -1.8
LIG4-201ENST00000356922 CCDC187A0A096LP49 1063 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 A0A0A6YYD5 115 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 LOC101059948A0A1B0GTJ6 334 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 GMNCA6NCL1 334 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CYR61O00622 381 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 PRKNO60260 465 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 DIAPH2O60879 1101 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SHOX2O60902 331 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 SEC22BO75396 215 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ENO1P06733 434 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 FURINP09958 794 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 JMJD7P0C870 316 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 BCKDHAP12694 445 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ALOX15P16050 662 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 ALOX12P18054 663 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 HIST1H1TP22492 207 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 PTX3P26022 381 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 ST13P50502 369 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 LIM2P55344 173 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ID2Q02363 134 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 IFT88Q13099 833 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SLAMF1Q13291 335 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms