RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 KIF18AQ8NI77 898 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 GAL3ST3Q96A11 431 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 PTCD3Q96EY7 689 aaKnown RBP17.27■□□□□ 0.36
CLN3-202ENST00000355477 SEC16BQ96JE7 1060 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 MAGEB10Q96LZ2 347 aaPredicted RBP17.27■□□□□ 0.36
CLN3-202ENST00000355477 PTCHD1Q96NR3 888 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 QRFPRQ96P65 431 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 SLC29A3Q9BZD2 475 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 TSPYL1Q9H0U9 437 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 DYTNA2CJ06 578 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 ERI3O43414 337 aaKnown RBP17.26■□□□□ 0.35
CLN3-202ENST00000355477 UQCRHP07919 91 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 MAOAP21397 527 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 GSTM2P28161 218 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 TYK2P29597 1187 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 CASP2P42575 452 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 PLA2G16P53816 162 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 AP2B1P63010 937 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 IRF8Q02556 426 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 ZNF33BQ06732 778 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 E2F2Q14209 437 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 TBCCQ15814 346 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 FAM83EQ2M2I3 478 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 QSOX2Q6ZRP7 698 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 CCDC91Q7Z6B0 441 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 PLD6Q8N2A8 252 aaKnown RBP17.26■□□□□ 0.35
CLN3-202ENST00000355477 RHEBL1Q8TAI7 183 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 M1APQ8TC57 530 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 GRHL3Q8TE85 626 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 UBTD2Q8WUN7 234 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 SLC44A1Q8WWI5 657 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 FAR2Q96K12 515 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 LPAR4Q99677 370 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 EFCAB11Q9BUY7 163 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 NECTIN3Q9NQS3 549 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 STMN3Q9NZ72 180 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 NAV2Q8IVL1 2488 aa17.26■□□□□ 0.35
CLN3-202ENST00000355477 DIDO1Q9BTC0 2240 aaKnown RBP17.25■□□□□ 0.35
CLN3-202ENST00000355477 MAST4O15021 2626 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 IGKV3D-11A0A0A0MRZ8 115 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 K7EPI3 171 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 MAN1A2O60476 641 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 SEMA7AO75326 666 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 KLHL2O95198 593 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 SERPINB8P50452 374 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 LAPTM5Q13571 262 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 ACAP2Q15057 778 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 EXT1Q16394 746 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 FHL5Q5TD97 284 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 ABHD17BQ5VST6 288 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 OR2L5Q8NG80 312 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 UHMK1Q8TAS1 419 aaKnown RBP17.25■□□□□ 0.35
CLN3-202ENST00000355477 PRR7Q8TB68 274 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 F2RL3Q96RI0 385 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 NPAS2Q99743 824 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 REXO4Q9GZR2 422 aaKnown RBP17.25■□□□□ 0.35
CLN3-202ENST00000355477 RNF32Q9H0A6 362 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 KCNK13Q9HB14 408 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 MMP25Q9NPA2 562 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 ZNF358Q9NW07 568 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 OPTCQ9UBM4 332 aa17.25■□□□□ 0.35
CLN3-202ENST00000355477 LRRC14BA6NHZ5 514 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 PSMD12O00232 456 aaPredicted RBP17.24■□□□□ 0.35
CLN3-202ENST00000355477 ST13P50502 369 aaKnown RBP17.24■□□□□ 0.35
CLN3-202ENST00000355477 HNRNPFP52597 415 aaKnown RBP17.24■□□□□ 0.35
CLN3-202ENST00000355477 SLC26A5P58743 744 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 PCDH1Q08174 1060 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 HIST2H2ACQ16777 129 aaPredicted RBP17.24■□□□□ 0.35
CLN3-202ENST00000355477 PFKFB4Q16877 469 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 PAGE2BQ5JRK9 111 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 ACER2Q5QJU3 275 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 HIST2H2AA3Q6FI13 130 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 RPUSD3Q6P087 351 aaKnown RBP17.24■□□□□ 0.35
CLN3-202ENST00000355477 ABHD17CQ6PCB6 329 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 UBE3DQ7Z6J8 389 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 CRLF3Q8IUI8 442 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 CYP4X1Q8N118 509 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 KIF2BQ8N4N8 673 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 TEX9Q8N6V9 391 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 TMEM52Q8NDY8 209 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 PAFAH2Q99487 392 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 NPLQ9BXD5 320 aaPredicted RBP17.24■□□□□ 0.35
CLN3-202ENST00000355477 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.24■□□□□ 0.35
CLN3-202ENST00000355477 VPS11Q9H270 941 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 PRDM9Q9NQV7 894 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 PRDM7Q9NQW5 492 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 AGPAT4Q9NRZ5 378 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 NFU1Q9UMS0 254 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 DOPEY1Q5JWR5 2465 aa17.24■□□□□ 0.35
CLN3-202ENST00000355477 CENPEQ02224 2701 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 TRAV17A0A0B4J275 112 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 TCRBV16S1A1N1A0A5B0 115 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 ANKUB1A6NFN9 424 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 CYSRT1A8MQ03 144 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 SYCE1LA8MT33 242 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 B3GALT2O43825 422 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 KLK8O60259 260 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 INHBAP08476 426 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 CERS1P27544 350 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 MSH2P43246 934 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms