RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PHC2Q8IXK0 858 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TIGD4Q8IY51 512 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 SLC34A3Q8N130 599 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 SYT14Q8NB59 555 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TMEM145Q8NBT3 493 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TOR1AIP2Q8NFQ8 470 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PCNPQ8WW12 178 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 DNAJA4Q8WW22 397 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 SELENOMQ8WWX9 145 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TOE1Q96GM8 510 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 GPR137Q96N19 417 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 RPRD1AQ96P16 312 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 FAM193BQ96PV7 902 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 FAM129BQ96TA1 746 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 MARVELD1Q9BSK0 173 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 FAM126AQ9BYI3 521 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 SLC29A3Q9BZD2 475 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CIPCQ9C0C6 399 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PDGFDQ9GZP0 370 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 TPT1P8Q9HAU6 139 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 FZD3Q9NPG1 666 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TLR8Q9NR97 1041 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 MALT1Q9UDY8 824 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 FBXO9Q9UK97 447 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 FZD4Q9ULV1 537 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 YARS2Q9Y2Z4 477 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 PCDHGC4Q9Y5F7 938 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PRSS21Q9Y6M0 314 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 U3KQ87 197 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TRIP12Q14669 1992 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 KCNE1BA0A087WTH5 132 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 DRGXA6NNA5 263 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 FAM227AF5H4B4 570 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PROM1O43490 865 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PDE9AO76083 593 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 ARHGEF15O94989 841 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CLDN9O95484 217 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PRAMEF12O95522 483 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 IL1AP01583 271 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 THP07101 528 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 OR4Q2P0C623 313 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 GLULP15104 373 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 EPB42P16452 691 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CTPS1P17812 591 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 GPR15P49685 360 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 ATN1P54259 1190 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 CASP9P55211 416 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CAV3P56539 151 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 RAB25P57735 213 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CDC42P60953 191 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 SELENOWP63302 87 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CDC42EP1Q00587 391 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 RGS1Q08116 209 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 EFEMP1Q12805 493 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 GAB1Q13480 694 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 SUZ12Q15022 739 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 UPP1Q16831 310 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 WSCD2Q2TBF2 565 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 DGKKQ5KSL6 1271 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 DDI2Q5TDH0 399 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 C22orf42Q6IC83 251 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TMIGD1Q6UXZ0 262 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 BCDIN3DQ7Z5W3 292 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 CLDN19Q8N6F1 224 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CLDN22Q8N7P3 220 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 ZNF680Q8NEM1 530 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 OR7D4Q8NG98 312 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 OR9Q1Q8NGQ5 310 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 TMEM203Q969S6 136 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 KIAA1143Q96AT1 154 aaPredicted RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 EID2BQ96D98 161 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 COPS8Q99627 209 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 SOSTQ9BQB4 213 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 AIFM2Q9BRQ8 373 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 ARHGAP39Q9C0H5 1083 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PPIL3Q9H2H8 161 aaKnown RBP6.52□□□□□ -1.37
VPS39-202ENST00000348544 RERGLQ9H628 205 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 PPP1R3EQ9H7J1 279 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 HEXA-AS1Q9H8Q6 139 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 C11orf16Q9NQ32 467 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 CLN6Q9NWW5 311 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 DNAJC27Q9NZQ0 273 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 RWDD3Q9Y3V2 267 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 SNX11Q9Y5W9 270 aa6.52□□□□□ -1.37
VPS39-202ENST00000348544 OTOFQ9HC10 1997 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 RPS10-NUDT3A0A1W2PQS6 291 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 F8W810 466 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 GTPBP1O00178 669 aaKnown RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 NFKBIEO00221 500 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 FABP7O15540 132 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 LYRM1O43325 122 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 PRAMEF4O60810 478 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SNAI1O95863 264 aaPredicted RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 HMBSP08397 361 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 IGFBP1P08833 259 aaPredicted RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 SLC2A2P11168 524 aaPredicted RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 LAMP1P11279 417 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ODC1P11926 461 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 AMD1P17707 334 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ATF4P18848 351 aaPredicted RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms