RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 CLMPQ9H6B4 373 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 TM7SF3Q9NS93 570 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 CLN6Q9NWW5 311 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 ZNF510Q9Y2H8 683 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 PCDHGB3Q9Y5G1 929 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 MIA3Q5JRA6 1907 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 RPLP2P05387 115 aaKnown RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 GAB1Q13480 694 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 PYDC2Q56P42 97 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 TCEAL5Q5H9L2 206 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 SLC35F1Q5T1Q4 408 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 SDE2Q6IQ49 451 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 FAM131AQ6UXB0 335 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 COMMD6Q7Z4G1 85 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 RBM45Q8IUH3 476 aaKnown RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 SUSD6Q92537 303 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 MYDGFQ969H8 173 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 FZD3Q9NPG1 666 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 RIMKLBQ9ULI2 386 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 SLC6A14Q9UN76 642 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 OR1A2Q9Y585 309 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 M0R3H8 397 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 C9P02748 559 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 C8GP07360 202 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 AMD1P17707 334 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 CNR2P34972 360 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 ELP6Q0PNE2 266 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 PSRC1Q6PGN9 363 aaPredicted RBP11.46□□□□□ -0.57
USP1-201ENST00000339950 C17orf64Q86WR6 236 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 OR4N5Q8IXE1 308 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 OR5AR1Q8NGP9 310 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 CMTM7Q96FZ5 175 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 ALPK1Q96QP1 1244 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 TDP1Q9NUW8 608 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 H2AFY2Q9P0M6 372 aaPredicted RBP11.46□□□□□ -0.57
USP1-201ENST00000339950 CARD8Q9Y2G2 431 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 WBP11Q9Y2W2 641 aaKnown RBP11.46□□□□□ -0.57
USP1-201ENST00000339950 SCN2AQ99250 2005 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 SCN3AQ9NY46 2000 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 A0A1W2PPK0 400 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 HIDE1A8MVS5 230 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 AREL1O15033 823 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 ADH1AP07327 375 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 GSTM2P28161 218 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 LIPAP38571 399 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 ACVR1Q04771 509 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 CAMK1Q14012 370 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 SLC5A12Q1EHB4 618 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 SLC43A3Q8NBI5 491 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 ZNF675Q8TD23 568 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 PXYLP1Q8TE99 480 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 TRUB1Q8WWH5 349 aaKnown RBP11.46□□□□□ -0.57
USP1-201ENST00000339950 S100ZQ8WXG8 99 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 FNDC11Q9BVV2 318 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 POLR2J3Q9H1A7 115 aaKnown RBP11.46□□□□□ -0.57
USP1-201ENST00000339950 IRF2BPLQ9H1B7 796 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 CCDC177Q9NQR7 707 aaPredicted RBP11.46□□□□□ -0.57
USP1-201ENST00000339950 SNX11Q9Y5W9 270 aa11.46□□□□□ -0.57
USP1-201ENST00000339950 GVINP1Q7Z2Y8 2422 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 FAM155AB1AL88 458 aaPredicted RBP11.46□□□□□ -0.58
USP1-201ENST00000339950 GFRA2O00451 464 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 C1SP09871 688 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 MAPK8P45983 427 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 ISL1P61371 349 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 CD83Q01151 205 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 TMEM31Q5JXX7 168 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 NIPAL1Q6NVV3 410 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 USP30Q70CQ3 517 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 GET4Q7L5D6 327 aaPredicted RBP11.46□□□□□ -0.58
USP1-201ENST00000339950 LHFPL3Q86UP9 236 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 FAM9CQ8IZT9 166 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 DIRAS2Q96HU8 199 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 ZNF347Q96SE7 839 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 CPPED1Q9BRF8 314 aaPredicted RBP11.46□□□□□ -0.58
USP1-201ENST00000339950 P2RY12Q9H244 342 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 BEX1Q9HBH7 125 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 C8orf4Q9NR00 106 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 UCKL1Q9NWZ5 548 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 TMEM9Q9P0T7 183 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 TBC1D14Q9P2M4 693 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 FBXO10Q9UK96 956 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 PCDHGA4Q9Y5G9 962 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 PCDHGA10Q9Y5H3 936 aa11.46□□□□□ -0.58
USP1-201ENST00000339950 SPIN1Q9Y657 262 aaPredicted RBP11.46□□□□□ -0.58
USP1-201ENST00000339950 WNT9AO14904 365 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 LRRTM2O43300 516 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 CCNB2O95067 398 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 CD97P48960 835 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 DGKGP49619 791 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 SUOXP51687 545 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 B4GALNT1Q00973 533 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 ZNF404Q494X3 552 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 IQCHQ86VS3 1027 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 CCDC116Q8IYX3 515 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 RASGEF1AQ8N9B8 481 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 TMEM145Q8NBT3 493 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 PDPRQ8NCN5 879 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 C19orf18Q8NEA5 215 aa11.45□□□□□ -0.58
USP1-201ENST00000339950 TSPEARQ8WU66 669 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms