RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RPS3AP61247 264 aaKnown RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 SHC2P98077 582 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 RALGDSQ12967 914 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 SYVN1Q86TM6 617 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 PLD6Q8N2A8 252 aaKnown RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 OR56A3Q8NH54 315 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 RNF121Q9H920 327 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 A0A0U1RQS6 177 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 FADS2P1A8MWK0 482 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 CLIC1O00299 241 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 SRPX2O60687 465 aaPredicted RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 ZNF888P0CJ79 500 aaPredicted RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 CCNA2P20248 432 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 ACSL1P33121 698 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 PER3P56645 1201 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 IKBIPQ70UQ0 350 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 RASGEF1AQ8N9B8 481 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 OR52E4Q8NGH9 312 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 KHSRPQ92945 711 aaKnown RBP eCLIP9.74□□□□□ -0.85
USP54-201ENST00000339859 FUBP1Q96AE4 644 aaKnown RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 L3HYPDHQ96EM0 354 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 ZNF778Q96MU6 729 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 NMUR2Q9GZQ4 415 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 PLXNA1Q9UIW2 1896 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 MCM3APO60318 1980 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 MROH6A6NGR9 719 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 MYBPC1Q00872 1141 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 KPNB1Q14974 876 aaKnown RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 PTGES3Q15185 160 aaKnown RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 KLHL12Q53G59 568 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 HIPK1Q86Z02 1210 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 FBXL6Q8N531 539 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 GAB3Q8WWW8 586 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 ASPNQ9BXN1 380 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 IGSF5Q9NSI5 407 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 IFT52Q9Y366 437 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 SH3GLB1Q9Y371 365 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 A8MVJ9 347 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 TRIM3O75382 744 aaPredicted RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 RFPL1O75677 317 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 SCRG1O75711 98 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 PSMG1O95456 288 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 RENP00797 406 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 BCHEP06276 602 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 DPTQ07507 201 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 UNC50Q53HI1 259 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 IZUMO2Q6UXV1 221 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 FAM160A2Q8N612 972 aaPredicted RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 BBS10Q8TAM1 723 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 SMAD5Q99717 465 aaKnown RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 TTYH1Q9H313 450 aaPredicted RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 ZNF304Q9HCX3 659 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 TM9SF3Q9HD45 589 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 HPF1Q9NWY4 346 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 GLOD5A6NK44 160 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 PRAMEF2O60811 474 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 HSMCR30P0CW71 290 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 IDH2P48735 452 aaKnown RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 ZNF630Q2M218 657 aaPredicted RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 CTSL3PQ5NE16 218 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 FAM69BQ5VUD6 431 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 PJA1Q8NG27 643 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.74□□□□□ -0.85
USP54-201ENST00000339859 MAGEE2Q8TD90 523 aaPredicted RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 RHBDF1Q96CC6 855 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 KCNA7Q96RP8 456 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 GPN2Q9H9Y4 310 aaPredicted RBP9.74□□□□□ -0.85
USP54-201ENST00000339859 ARL8BQ9NVJ2 186 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 PRSS51A0A1B0GVH4 220 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 METTL12A8MUP2 240 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 WWP2O00308 870 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 UGT2B11O75310 529 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 CLEC3AO75596 197 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 MFN2O95140 757 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 NPPAP01160 153 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 G6PDP11413 515 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 UGT2B7P16662 529 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 CORO7P57737 925 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 ARG2P78540 354 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 ZXDAP98168 799 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 CDKL1Q00532 357 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 KLC1Q07866 573 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 RAPSNQ13702 412 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 TSSK4Q6SA08 328 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 TMEM184AQ6ZMB5 413 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 ZNF550Q7Z398 422 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 OR2AJ1Q8NGZ0 328 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 MYDGFQ969H8 173 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 NXT1Q9UKK6 140 aaKnown RBP9.73□□□□□ -0.85
USP54-201ENST00000339859 PARP14Q460N5 1801 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 EEFSECP57772 596 aaKnown RBP9.73□□□□□ -0.85
USP54-201ENST00000339859 SMU1Q2TAY7 513 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 EPGNQ6UW88 154 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 LIMS2Q7Z4I7 341 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 SPPL2CQ8IUH8 684 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 CNTN4Q8IWV2 1026 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 NUP43Q8NFH3 380 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 MCM8Q9UJA3 840 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 C9JVG2 144 aa9.73□□□□□ -0.85
USP54-201ENST00000339859 MGRN1O60291 552 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms