RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ACSL6Q9UKU0 697 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 ANGPTL2Q9UKU9 493 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 CDC14AQ9UNH5 594 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 A0A088AWK7 358 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 ZNF860A6NHJ4 632 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 DNAJB6O75190 326 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 VIMP08670 466 aaKnown RBP21.01■□□□□ 0.95
SDC3-202ENST00000339394 ZNF10P21506 573 aaPredicted RBP21.01■□□□□ 0.95
SDC3-202ENST00000339394 HIST1H1TP22492 207 aaPredicted RBP21.01■□□□□ 0.95
SDC3-202ENST00000339394 ATP5A1P25705 553 aaKnown RBP21.01■□□□□ 0.95
SDC3-202ENST00000339394 BSGP35613 385 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 SSR2P43308 183 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 TSFMP43897 325 aaKnown RBP21.01■□□□□ 0.95
SDC3-202ENST00000339394 HK2P52789 917 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 SKP1P63208 163 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 NKAIN1Q4KMZ8 207 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 LCN10Q6JVE6 187 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 NIPAL1Q6NVV3 410 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 ZNF517Q6ZMY9 492 aaPredicted RBP21.01■□□□□ 0.95
SDC3-202ENST00000339394 PADI1Q9ULC6 663 aa21.01■□□□□ 0.95
SDC3-202ENST00000339394 MED19A0JLT2 244 aaPredicted RBP21■□□□□ 0.95
SDC3-202ENST00000339394 IQCJ-SCHIP1C9J366 451 aaPredicted RBP21■□□□□ 0.95
SDC3-202ENST00000339394 NPIPB8E9PQR5 432 aa21■□□□□ 0.95
SDC3-202ENST00000339394 ZNF195O14628 629 aa21■□□□□ 0.95
SDC3-202ENST00000339394 LSM1O15116 133 aaKnown RBP21■□□□□ 0.95
SDC3-202ENST00000339394 RDH16O75452 317 aa21■□□□□ 0.95
SDC3-202ENST00000339394 PRPH2P23942 346 aa21■□□□□ 0.95
SDC3-202ENST00000339394 CERS1P27544 350 aa21■□□□□ 0.95
SDC3-202ENST00000339394 MTTPP55157 894 aa21■□□□□ 0.95
SDC3-202ENST00000339394 NR6A1Q15406 480 aa21■□□□□ 0.95
SDC3-202ENST00000339394 TBC1D25Q3MII6 688 aa21■□□□□ 0.95
SDC3-202ENST00000339394 FAM199XQ6PEV8 388 aaPredicted RBP21■□□□□ 0.95
SDC3-202ENST00000339394 ERMP1Q7Z2K6 904 aa21■□□□□ 0.95
SDC3-202ENST00000339394 COMMD6Q7Z4G1 85 aa21■□□□□ 0.95
SDC3-202ENST00000339394 SHISA5Q8N114 240 aa21■□□□□ 0.95
SDC3-202ENST00000339394 C1orf52Q8N6N3 182 aaKnown RBP21■□□□□ 0.95
SDC3-202ENST00000339394 ACOT4Q8N9L9 421 aa21■□□□□ 0.95
SDC3-202ENST00000339394 OR5T3Q8NGG3 340 aa21■□□□□ 0.95
SDC3-202ENST00000339394 C11orf24Q96F05 449 aaPredicted RBP21■□□□□ 0.95
SDC3-202ENST00000339394 ZNF317Q96PQ6 595 aaPredicted RBP21■□□□□ 0.95
SDC3-202ENST00000339394 DPH2Q9BQC3 489 aaPredicted RBP21■□□□□ 0.95
SDC3-202ENST00000339394 ROGDIQ9GZN7 287 aa21■□□□□ 0.95
SDC3-202ENST00000339394 DDX31Q9H8H2 851 aaKnown RBP21■□□□□ 0.95
SDC3-202ENST00000339394 COPS7BQ9H9Q2 264 aaPredicted RBP21■□□□□ 0.95
SDC3-202ENST00000339394 MEAF6Q9HAF1 191 aa21■□□□□ 0.95
SDC3-202ENST00000339394 SLC22A11Q9NSA0 550 aa21■□□□□ 0.95
SDC3-202ENST00000339394 FGFR1OP2Q9NVK5 253 aa21■□□□□ 0.95
SDC3-202ENST00000339394 USH1CQ9Y6N9 552 aa21■□□□□ 0.95
SDC3-202ENST00000339394 NCOR2Q9Y618 2525 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 CEP295Q9C0D2 2601 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 EEDO75530 441 aaKnown RBP20.99■□□□□ 0.95
SDC3-202ENST00000339394 SCELO95171 688 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 GBAP04062 536 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 CCNYL3P0C7X3 344 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 AGXTP21549 392 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 OLR1P78380 273 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 DSG2Q14126 1118 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 SLC9A5Q14940 896 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 KIAA0040Q15053 153 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 SPIN4Q56A73 249 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 VWA5B1Q5TIE3 1220 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 MAVSQ7Z434 540 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 NLGN4XQ8N0W4 816 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 NLGN4YQ8NFZ3 816 aaPredicted RBP20.99■□□□□ 0.95
SDC3-202ENST00000339394 MR1Q95460 341 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 COL26A1Q96A83 441 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 TUBGCP3Q96CW5 907 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 SERINC2Q96SA4 455 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 LRTM1Q9HBL6 345 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 RIC8BQ9NVN3 520 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 C1orf109Q9NX04 203 aa20.99■□□□□ 0.95
SDC3-202ENST00000339394 TRPC5OSA6NMA1 111 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 B3GALT2O43825 422 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 SEC22BO75396 215 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 ONECUT2O95948 504 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 KLK1P06870 262 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 MAT1AQ00266 395 aaKnown RBP20.98■□□□□ 0.95
SDC3-202ENST00000339394 ACSM2AQ08AH3 577 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 MAP7Q14244 749 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 GALNTL6Q49A17 601 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 ARHGAP40Q5TG30 622 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 ACSM2BQ68CK6 577 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 PAGE2Q7Z2X7 111 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 NUDT13Q86X67 352 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 DTX1Q86Y01 620 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 LRRC34Q8IZ02 419 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 ESX1Q8N693 406 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 CHST8Q9H2A9 424 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 AKTIPQ9H8T0 292 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 HCN3Q9P1Z3 774 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 GIMAP2Q9UG22 337 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 ADAM29Q9UKF5 820 aa20.98■□□□□ 0.95
SDC3-202ENST00000339394 RAD1O60671 282 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 PEX11AO75192 247 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 FBLP22087 321 aaKnown RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 TPP2P29144 1249 aaPredicted RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 LSP1P33241 339 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 SLAMF1Q13291 335 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 RUNX2Q13950 521 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 SYT16Q17RD7 645 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms