RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HEXBP07686 556 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 RAP1GDS1P52306 607 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 PKNOX1P55347 436 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 NAA20P61599 178 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 TBR1Q16650 682 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 TMEM35AQ53FP2 167 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 SGO1Q5FBB7 561 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 MRGPREQ86SM8 312 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 LAPTM4BQ86VI4 370 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 THAP4Q8WY91 577 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 EXTL1Q92935 676 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 KCNC2Q96PR1 638 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 CENPKQ9BS16 269 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 TMBIM4Q9HC24 238 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 MID1IP1Q9NPA3 183 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 KCNK9Q9NPC2 374 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 C3orf18Q9UK00 162 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 SNX6Q9UNH7 406 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 ACTL7BQ9Y614 415 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 CCDC88CQ9P219 2028 aa15.02■□□□□ -0
CCDC28A-201ENST00000332797 LOC400499M0QZD8 3231 aa15.02□□□□□ -0.01
CCDC28A-201ENST00000332797 IDSB3KWA1 339 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 RTCAO00442 366 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 B3GALT2O43825 422 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 BMP10O95393 424 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 ITGB2P05107 769 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 PTX3P26022 381 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 CERS1P27544 350 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 RHDQ02161 417 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 ASPHQ12797 758 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 ATP1A4Q13733 1029 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 MINDY4Q4G0A6 757 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 DEPDC1Q5TB30 811 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 BORAQ6PGQ7 559 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 HDXQ7Z353 690 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 PPP1R32Q7Z5V6 425 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 UBE3DQ7Z6J8 389 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SRFBP1Q8NEF9 429 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 AGAP11Q8TF27 550 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 QRFPRQ96P65 431 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 GATA5Q9BWX5 397 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SLC29A3Q9BZD2 475 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SEMA3GQ9NS98 782 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 FARSBQ9NSD9 589 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 MKL2Q9ULH7 1088 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 CACNA1BQ00975 2339 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 ARGFXA6NJG6 315 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 PSMD12O00232 456 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 FOXE1O00358 373 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 UBFD1O14562 309 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 CDC123O75794 336 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 ESRRBO95718 433 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 IGHEP01854 428 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 RNH1P13489 461 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 MMP11P24347 488 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 HMOX2P30519 316 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 ETV4P43268 484 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SSR2P43308 183 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 EMP2P54851 167 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 MTTPP55157 894 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 TCHHL1Q5QJ38 904 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 C10orf62Q5T681 223 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 FAAH2Q6GMR7 532 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 CA13Q8N1Q1 262 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 METTL6Q8TCB7 284 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SELENOMQ8WWX9 145 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SREK1Q8WXA9 508 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 RGMAQ96B86 450 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 OR1F2PQ96R84 312 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 KCNA7Q96RP8 456 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SERINC2Q96SA4 455 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 TBCDQ9BTW9 1192 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SORBS1Q9BX66 1292 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 SHCBP1LQ9BZQ2 653 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 ROGDIQ9GZN7 287 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 CLK4Q9HAZ1 481 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 PRDM7Q9NQW5 492 aa15.01□□□□□ -0.01
CCDC28A-201ENST00000332797 AGPSO00116 658 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 MANBAO00462 879 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 PEX12O00623 359 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 PLPP1O14494 284 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 TM9SF1O15321 606 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 CRCPO75575 148 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 ZWINTO95229 277 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 ETHE1O95571 254 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 PDYNP01213 254 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 KRT6AP02538 564 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 KRT6BP04259 564 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 ENO1P06733 434 aaKnown RBP15□□□□□ -0.01
CCDC28A-201ENST00000332797 BPGMP07738 259 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 FHP07954 510 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 IL10P22301 178 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 KRT6CP48668 564 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 MAGOHP61326 146 aaKnown RBP15□□□□□ -0.01
CCDC28A-201ENST00000332797 RUNX2Q13950 521 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 AP5B1Q2VPB7 878 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 CPZQ66K79 652 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 ZNF793Q6ZN11 406 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 ZCCHC23Q6ZST2 131 aa15□□□□□ -0.01
CCDC28A-201ENST00000332797 TTC9Q92623 222 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms