RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 KLHL21Q9UJP4 597 aa12.92□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF670-ZNF695F2Z2N8 137 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 FABP7O15540 132 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC25A14O95258 325 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 CTPS1P17812 591 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 TNNI3P19429 210 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 MAP2K3P46734 347 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 LRRC32Q14392 662 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 SPHARQ15513 63 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 FAM151BQ6UXP7 276 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 ANKS3Q6ZW76 656 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 GPR142Q7Z601 462 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 WDR90Q96KV7 1748 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 FAM240BA0A1B0GVZ2 78 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 ICAM2P13598 275 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 GRK4P32298 578 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 TAGLNQ01995 201 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 PDZD3Q86UT5 571 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 DENND1CQ8IV53 801 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 LIX1LQ8IVB5 337 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 C9orf62Q8N4C0 152 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 MTERF3Q96E29 417 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 FAM129BQ96TA1 746 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 TMEM121BQ9BXQ6 578 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 SNX11Q9Y5W9 270 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 PATJQ8NI35 1801 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 PTPRDP23468 1912 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 ARL5CA6NH57 179 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 KCNJ13O60928 360 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 SCN2BO60939 215 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 SNAI1O95863 264 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 GASTP01350 101 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 BEX3Q00994 111 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 MICAQ29983 383 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 COX20Q5RI15 118 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 ATXN7L2Q5T6C5 722 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 ZBTB37Q5TC79 503 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 FRMPD2BQ6IN97 320 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 TMEM65Q6PI78 240 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF852Q6ZMS4 543 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 SYNPOQ8N3V7 929 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 C7orf57Q8NEG2 295 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 OR6C4Q8NGE1 309 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 WDFY2Q96P53 400 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 DOHHQ9BU89 302 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 C1QTNF6Q9BXI9 259 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 FAM126AQ9BYI3 521 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 ELOVL6Q9H5J4 265 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 TXNL4BQ9NX01 149 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 ING3Q9NXR8 418 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 SCML1Q9UN30 329 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 TLR6Q9Y2C9 796 aa12.91□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC35F4A4IF30 521 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 CLDN9O95484 217 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 COX7A2P14406 83 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 DDCP20711 480 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 BNC1Q01954 994 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 SPATA2LQ8IUW3 424 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 Q8N402 240 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 CELF5Q8N6W0 485 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 AQP11Q8NBQ7 271 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC37A3Q8NCC5 494 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 BTN2A2Q8WVV5 523 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC25A46Q96AG3 418 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 PHF21AQ96BD5 680 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 ALPK3Q96L96 1907 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 MAGEB10Q96LZ2 347 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 TCF25Q9BQ70 676 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 SPATA9Q9BWV2 254 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 P2RY12Q9H244 342 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 NIPAL2Q9H841 368 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 PRM3Q9NNZ6 103 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 POFUT2Q9Y2G5 429 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 LSM2Q9Y333 95 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 OR5K3A6NET4 321 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 MYL12BO14950 172 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 PSIP1O75475 530 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 NCR1O76036 304 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC22A5O76082 557 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC2A2P11168 524 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 ARSBP15848 533 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 MYL12AP19105 171 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 SEMG2Q02383 582 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 DDX39BQ13838 428 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 UPP1Q16831 310 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 LCN1P1Q5VSP4 162 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 NOXRED1Q6NXP6 359 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 SYT12Q8IV01 421 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 C19orf18Q8NEA5 215 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 OR4C15Q8NGM1 316 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 DCLRE1CQ96SD1 692 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 TM9SF2Q99805 663 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 ACBD6Q9BR61 282 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 LINC00597Q9H2U6 94 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF224Q9NZL3 707 aa12.9□□□□□ -0.34
CCDC88C-201ENST00000331194 PLXNA4Q9HCM2 1894 aa12.9□□□□□ -0.35
CCDC88C-201ENST00000331194 PRAMEF4O60810 478 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 SYPP08247 313 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 ALPIP09923 528 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 EBLN1P0CF75 366 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms