RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 TMEM246Q9BRR3 403 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 YTHDF1Q9BYJ9 559 aaKnown RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 CLEC4EQ9ULY5 219 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 EXOSC1Q9Y3B2 195 aaKnown RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 PIGBOS1A0A0B4J2F0 54 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 LRRC10BA6NIK2 292 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 C8AP07357 584 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 OR8U9P0C7N5 309 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 BMP6P22004 513 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 RHBDL3P58872 404 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 HERVK_113P63132 956 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 PPA1Q15181 289 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 ZNF404Q494X3 552 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 TRIM74Q86UV6 250 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 TRIM73Q86UV7 250 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 FANK1Q8TC84 345 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 OSTF1Q92882 214 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 ZNF578Q96N58 590 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 ERVK-6Q9BXR3 956 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 ZNF442Q9H7R0 627 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 GPRC5BQ9NZH0 403 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 EXTL2Q9UBQ6 330 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 PADI3Q9ULW8 664 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 SLC38A8A6NNN8 435 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 A8MV72 311 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 MT-CO2P00403 227 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 C8orf89P0DMQ9 161 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 VIPR1P32241 457 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 GGT2P36268 569 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 INTS5Q6P9B9 1019 aaKnown RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 KCTD18Q6PI47 426 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 UNQ6126/PRO20091Q6UXV3 157 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 PYROXD2Q8N2H3 581 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 TRAM1L1Q8N609 369 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 SAMD12Q8N8I0 201 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 FRZBQ92765 325 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 RRNAD1Q96FB5 475 aaKnown RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 C7orf50Q9BRJ6 194 aaKnown RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 MAN2C1Q9NTJ4 1040 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 DHDHQ9UQ10 334 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 RNF6Q9Y252 685 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 TCRBV5S4A2TA0A5A2 114 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 TTLL8A6PVC2 850 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 A8MVJ9 347 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 C11orf98E9PRG8 122 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 B4GALT4O60513 344 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 TSPAN15O95858 294 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 LCKP06239 509 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 CKMT2P17540 419 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 FRKP42685 505 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 CLCNKBP51801 687 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 MALLQ13021 153 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 HNRNPA0Q13151 305 aaKnown RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 NFE2L1Q14494 772 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 ARSIQ5FYB1 569 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 ZNF529Q6P280 563 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 GALNT10Q86SR1 603 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 LILRB2Q8N423 598 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 TOR1AIP2Q8NFQ8 470 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 PROKR1Q8TCW9 393 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 NR4A3Q92570 626 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 GCDHQ92947 438 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 LRRC58Q96CX6 371 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 MYRFLQ96LU7 910 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 CCM2Q9BSQ5 444 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 UNKLQ9H9P5 680 aaKnown RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 USP29Q9HBJ7 922 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-201ENST00000302528 ZDHHC3Q9NYG2 299 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 PPM1HQ9ULR3 514 aa10.05□□□□□ -0.8
CLIP1-201ENST00000302528 A0A0U1RQK1 487 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 C2orf72A6NCS6 295 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 PDLIM1O00151 329 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 LRCH4O75427 683 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 CPNE6O95741 557 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 PRKCGP05129 697 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 MRPL3P09001 348 aaKnown RBP10.04□□□□□ -0.8
CLIP1-201ENST00000302528 RAC2P15153 192 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 THBS2P35442 1172 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 CSKP41240 450 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 CDKN2BP42772 138 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 ARRB1P49407 418 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-201ENST00000302528 FLT3LGP49771 235 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 GPR33Q49SQ1 333 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 AARDQ4LEZ3 155 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 TMEM35AQ53FP2 167 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 FRG2Q64ET8 278 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 PLEKHG7Q6ZR37 379 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 NPAS4Q8IUM7 802 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 LIX1LQ8IVB5 337 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 MSL3Q8N5Y2 521 aaKnown RBP10.04□□□□□ -0.8
CLIP1-201ENST00000302528 FRG2BQ96QU4 278 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 PHOX2BQ99453 314 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 ACBD6Q9BR61 282 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 ACTL8Q9H568 366 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 NDUFAF4Q9P032 175 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 CFAP20Q9Y6A4 193 aaKnown RBP10.04□□□□□ -0.8
CLIP1-201ENST00000302528 DCST2Q5T1A1 773 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 ANKRD22Q5VYY1 191 aa10.04□□□□□ -0.8
CLIP1-201ENST00000302528 KANK2Q63ZY3 851 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms