RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ZNF793Q6ZN11 406 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 ANKRD46Q86W74 232 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 SLC35F3Q8IY50 421 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 ZCCHC7Q8N3Z6 543 aaKnown RBP13.43□□□□□ -0.26
SS18-201ENST00000269137 CAMKVQ8NCB2 501 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 GAL3ST3Q96A11 431 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 FCRL4Q96PJ5 515 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 MACROD1Q9BQ69 325 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 INPP5KQ9BT40 448 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 EPB41L1Q9H4G0 881 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 DCLRE1BQ9H816 532 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 RNPEPL1Q9HAU8 725 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 C1GALT1Q9NS00 363 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 SH3BP4Q9P0V3 963 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 RNF215Q9Y6U7 377 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 USP34Q70CQ2 3546 aa13.43□□□□□ -0.26
SS18-201ENST00000269137 A0A0J9YVX5 310 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 C4orf51C9J302 202 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 YKT6O15498 198 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 TMPRSS11DO60235 418 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 STATHP02808 62 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 SP9P0CG40 484 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 DDX5P17844 614 aaKnown RBP13.42□□□□□ -0.26
SS18-201ENST00000269137 ATP5A1P25705 553 aaKnown RBP13.42□□□□□ -0.26
SS18-201ENST00000269137 MSX2P35548 267 aaPredicted RBP13.42□□□□□ -0.26
SS18-201ENST00000269137 GPR3P46089 330 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 MC1RQ01726 317 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 BNIP2Q12982 314 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 FLOT2Q14254 428 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 NR1D2Q14995 579 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 HEPACAMQ14CZ8 416 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 MRM1Q6IN84 353 aaKnown RBP13.42□□□□□ -0.26
SS18-201ENST00000269137 ANKRD26P1Q6NSI1 321 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 NATD1Q8N6N6 113 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 ENDOVQ8N8Q3 282 aaKnown RBP13.42□□□□□ -0.26
SS18-201ENST00000269137 STMN2Q93045 179 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 MIEF2Q96C03 454 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 PPCDCQ96CD2 204 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 TRAPPC9Q96Q05 1148 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 PHF12Q96QT6 1004 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 DUSP23Q9BVJ7 150 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 KLHL25Q9H0H3 589 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 CAPN10Q9HC96 672 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 NLGN3Q9NZ94 848 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 LRIT1Q9P2V4 623 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 PCDHB14Q9Y5E9 798 aa13.42□□□□□ -0.26
SS18-201ENST00000269137 URADA6NGE7 173 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 H0YGG7 62 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 FKBP6O75344 327 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 PSMG1O95456 288 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 B3GALT4O96024 378 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 SMIM10L1P0DMW3 83 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ST6GAL1P15907 406 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 GLB1P16278 677 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 TCN1P20061 433 aaPredicted RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 CDH3P22223 829 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 AVPR2P30518 371 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 GSK3BP49841 420 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ARF3P61204 181 aaPredicted RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 LIPEQ05469 1076 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 SLC9A5Q14940 896 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 FXNQ16595 210 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 HLA-BQ31612 363 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ZNF385BQ569K4 471 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 SWT1Q5T5J6 900 aaKnown RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 AAGABQ6PD74 315 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 AMER3Q8N944 861 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ACOT4Q8N9L9 421 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 FAM156AQ8NDB6 213 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 UTP15Q8TED0 518 aaKnown RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 SAP25Q8TEE9 199 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 RERGQ96A58 199 aaPredicted RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 SMIM10Q96HG1 83 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 GBP5Q96PP8 586 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ROGDIQ9GZN7 287 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 CHRNA10Q9GZZ6 450 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 MUC13Q9H3R2 512 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ALG2Q9H553 416 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 MIEF1Q9NQG6 463 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 SLC6A13Q9NSD5 602 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 ASXL3Q9C0F0 2248 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 LOC105369274A0A096LPK9 316 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 LOC102723532A0A0G2JNH3 316 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ZSCAN9O15535 394 aaPredicted RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 PRAMEF10O60809 474 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 GUCY1B2O75343 617 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 FAM58BPP0C7Q3 252 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ZCCHC18P0CG32 403 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 DRD2P14416 443 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 CDKN2CP42773 168 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 FRMPD2BQ6IN97 320 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 IRGCQ6NXR0 463 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ZCCHC8Q6NZY4 707 aaKnown RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 PTRH1Q86Y79 214 aaKnown RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 TICAM1Q8IUC6 712 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 OR4N4Q8N0Y3 316 aa13.41□□□□□ -0.26
SS18-201ENST00000269137 ZNF655Q8N720 491 aaPredicted RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 C19orf47Q8N9M1 422 aaKnown RBP13.41□□□□□ -0.26
SS18-201ENST00000269137 FAM47BQ8NA70 645 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms