RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CACUL1Q86Y37 369 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 PLPP6Q8IY26 295 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 MMP21Q8N119 569 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 DEPDC4Q8N2C3 294 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 C7orf34Q96L11 122 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 MGLLQ99685 303 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 EMILIN2Q9BXX0 1053 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 IRF2BPLQ9H1B7 796 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 TRPV5Q9NQA5 729 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 C5AR2Q9P296 337 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 STOX2Q9P2F5 926 aaPredicted RBP12.14□□□□□ -0.47
LIG1-201ENST00000263274 TMPRSS11EQ9UL52 423 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 DYRK1BQ9Y463 629 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 TRBC2A0A5B9 178 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 NUAK1O60285 661 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CDK1P06493 297 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 ANXA8P13928 327 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CDKN3Q16667 212 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 RPS26P11Q5JNZ5 115 aaPredicted RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 ARMC4Q5T2S8 1044 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 MED27Q6P2C8 311 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 BCDIN3DQ7Z5W3 292 aaKnown RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 GALNT13Q8IUC8 556 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 PEX5LQ8IYB4 626 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CYP4Z2PQ8N1L4 340 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CBARPQ8N350 705 aaPredicted RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 METTL4Q8N3J2 472 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 MINDY2Q8NBR6 621 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 ADAMTS19Q8TE59 1207 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 COL21A1Q96P44 957 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 SPG21Q9NZD8 308 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 OSGIN1Q9UJX0 560 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 PRKAB1Q9Y478 270 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CASP8AP2Q9UKL3 1982 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 METTL15A6NJ78 407 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 RTCAO00442 366 aaKnown RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 ZW10O43264 779 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 SSX4O60224 188 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 IGFBP1P08833 259 aaPredicted RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 IDSP22304 550 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CNR2P34972 360 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 POLR2LP62875 67 aaKnown RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 TUBA1BP68363 451 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 PTGES3Q15185 160 aaKnown RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 LIPJQ5W064 366 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 KLHL17Q6TDP4 642 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 TUBA1AQ71U36 451 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 TMEM150AQ86TG1 271 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 FAM124AQ86V42 546 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 SYNPOQ8N3V7 929 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 ZNF740Q8NDX6 193 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 WDR48Q8TAF3 677 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CLN6Q9NWW5 311 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 QPCTLQ9NXS2 382 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 TMCC3Q9ULS5 477 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 PLAGL1Q9UM63 463 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 ERVW-1Q9UQF0 538 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 IFT52Q9Y366 437 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CLDN24A6NM45 220 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 ZNF821O75541 412 aaPredicted RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 NNMTP40261 264 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 SOX3P41225 446 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 RGS6P49758 472 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 VEZF1Q14119 521 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 TEAD4Q15561 434 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 SLC5A12Q1EHB4 618 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 GDPD4Q6W3E5 623 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 GAREM2Q75VX8 874 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 OR8J2Q8NGG1 315 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 FCGR1BQ92637 280 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 AP2M1Q96CW1 435 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CDADC1Q9BWV3 514 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 ELAC1Q9H777 363 aaKnown RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 HMX1Q9NP08 348 aaPredicted RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 ZNF282Q9UDV7 671 aaPredicted RBP12.13□□□□□ -0.47
LIG1-201ENST00000263274 KLHL3Q9UH77 587 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 CDH23Q9H251 3354 aa12.13□□□□□ -0.47
LIG1-201ENST00000263274 DOCK6Q96HP0 2047 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 RANBP2P49792 3224 aaKnown RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 WWP2O00308 870 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 LEFTY1O75610 366 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 CCNB2O95067 398 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 HOXB6P17509 224 aaKnown RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 IL1RNP18510 177 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 CSNK1DP48730 415 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 FAM209AQ5JX71 171 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 TRIM40Q6P9F5 258 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 CELF5Q8N6W0 485 aaKnown RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 IL17FQ96PD4 163 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 OR4K3Q96R72 315 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 CTRCQ99895 268 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 GABARAPL1Q9H0R8 117 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 TIGARQ9NQ88 270 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 TBC1D14Q9P2M4 693 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 POFUT2Q9Y2G5 429 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 CFAP20Q9Y6A4 193 aaKnown RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 PRAMEF33A0A0G2JMD5 474 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 A0A1W2PRB8 838 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 CCL16O15467 120 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms