RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 OR13C3Q8NGS6 347 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 OTUB2Q96DC9 234 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 THOC3Q96J01 351 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 OR14A2Q96R54 314 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RNF26Q9BY78 433 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 BABAM2Q9NXR7 383 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PRAMEF22A3QJZ6 481 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TULP3O75386 442 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 BCAR3O75815 825 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC35G4P0C7Q5 338 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TGM2P21980 687 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 UQCRFS1P47985 274 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 HNRNPA0Q13151 305 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CHST9Q7L1S5 443 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PIGWQ7Z7B1 504 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TMPRSS6Q8IU80 811 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 OR13D1Q8NGV5 346 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MITD1Q8WV92 249 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 GFM1Q96RP9 751 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MYOCQ99972 504 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 OSBPL7Q9BZF2 842 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 APEX2Q9UBZ4 518 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC13A4Q9UKG4 626 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CDH10Q9Y6N8 788 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MROH7-TTC4A0A0A0MT08 1334 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 A0A087WWV3 80 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 A0A1W2PNV4 684 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 KCNAB3O43448 404 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 DDNO94850 711 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 XKP51811 444 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TCL1AP56279 114 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TFAMQ00059 246 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MARCH8Q5T0T0 291 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 C6orf52Q5T4I8 152 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 BRAT1Q6PJG6 821 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MON1AQ86VX9 555 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC38A4Q969I6 547 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 DPCDQ9BVM2 203 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 DMRT3Q9NQL9 472 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PGPEP1Q9NXJ5 209 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 DHX57Q6P158 1386 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 UROSP10746 265 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CXCR4P61073 352 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC15A4Q8N697 577 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MYO19Q96H55 970 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SF3B5Q9BWJ5 86 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 LSM5Q9Y4Y9 91 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PLSCR5A0PG75 271 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 DISC1C4P0D8 188 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ENTPD3O75355 529 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CPN1P15169 458 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ID1P41134 155 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CDH4P55283 916 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ATP5J2P56134 94 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 IL10RAQ13651 578 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 BMT2Q1RMZ1 405 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF766Q5HY98 468 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 C1orf189Q5VU69 101 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 BROXQ5VW32 411 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CNKSR3Q6P9H4 555 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF767PQ75MW2 155 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 GPR155Q7Z3F1 870 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CDK20Q8IZL9 346 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ASB5Q8WWX0 329 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CASKIN2Q8WXE0 1202 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TSNAXQ99598 290 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SAYSD1Q9NPB0 183 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RAD18Q9NS91 495 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ANGEL1Q9UNK9 670 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PTGDR2Q9Y5Y4 395 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 NPHP3Q7Z494 1330 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CACNA1AO00555 2505 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CCSO14618 274 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SEC14L5O43304 696 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CD3GP09693 182 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ANXA3P12429 323 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ARNTP27540 789 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MMP13P45452 471 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC11A2P49281 568 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CNTN2Q02246 1040 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SP3Q02447 781 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC1A5Q15758 541 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 DACT2Q5SW24 774 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 NOTUMQ6P988 496 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CCDC60Q8IWA6 550 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ADHFE1Q8IWW8 467 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ZSCAN18Q8TBC5 510 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PTP4A1Q93096 173 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RDH12Q96NR8 316 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CASD1Q96PB1 797 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 KCTD14Q9BQ13 255 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 C1QTNF7Q9BXJ2 289 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC28A3Q9HAS3 691 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 UBQLN4Q9NRR5 601 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 KLHL28Q9NXS3 571 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TINAGQ9UJW2 476 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RALYQ9UKM9 306 aaKnown RBP3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SLC7A11Q9UPY5 501 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms