RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 SNX6Q9UNH7 406 aa8.97□□□□□ -0.97
PHGDH-228ENST00000641847 TP53TG5Q9Y2B4 290 aa8.97□□□□□ -0.97
PHGDH-228ENST00000641847 PCDHB3Q9Y5E6 796 aa8.97□□□□□ -0.97
PHGDH-228ENST00000641847 PTGDR2Q9Y5Y4 395 aa8.97□□□□□ -0.97
PHGDH-228ENST00000641847 USH1CQ9Y6N9 552 aa8.97□□□□□ -0.97
PHGDH-228ENST00000641847 COL27A1Q8IZC6 1860 aaPredicted RBP8.96□□□□□ -0.97
PHGDH-228ENST00000641847 TRBC2A0A5B9 178 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 OR2A25A4D2G3 310 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SLC9B1P1A6NJY1 282 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 PIP5K1BO14986 540 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 HDAC3O15379 428 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 OR1F1O43749 312 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 KIF1CO43896 1103 aaKnown RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 TGDSO95455 350 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 C9P02748 559 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 CCL4P13236 92 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 EZRP15311 586 aaKnown RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 ALOX15P16050 662 aaPredicted RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 TCN2P20062 427 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 BCL6P41182 706 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SCTRP47872 440 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 AQP5P55064 265 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 PHEXP78562 749 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 BTKQ06187 659 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SF3A3Q12874 501 aaKnown RBP eCLIP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 IFT88Q13099 833 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SQSTM1Q13501 440 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 TRA2AQ13595 282 aaKnown RBP eCLIP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 DDX39BQ13838 428 aaKnown RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 C16orf72Q14CZ0 275 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 RBBP5Q15291 538 aaKnown RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 ZIC1Q15915 447 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 UGT3A2Q3SY77 523 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SNAP47Q5SQN1 464 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 CACHD1Q5VU97 1274 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 FRG2Q64ET8 278 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 ADNP2Q6IQ32 1131 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 TMEM71Q6P5X7 295 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 FIGLAQ6QHK4 219 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SCIMPQ6UWF3 145 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 TMIGD1Q6UXZ0 262 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 RNF44Q7L0R7 432 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 PRSS42Q7Z5A4 293 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 CPLX4Q7Z7G2 160 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 WDR75Q8IWA0 830 aaKnown RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 DDIASQ8IXT1 998 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 LAS2Q8IYD9 372 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 NLGN4XQ8N0W4 816 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SLC34A3Q8N130 599 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 TBC1D19Q8N5T2 526 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 NLGN4YQ8NFZ3 816 aaPredicted RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 OR7G3Q8NG95 312 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 RFWD2Q8NHY2 731 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SELENOMQ8WWX9 145 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 CCT6BQ92526 530 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 ZUFSPQ96AP4 578 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 PPP1R36Q96LQ0 422 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 TEFMQ96QE5 360 aaKnown RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 FRG2BQ96QU4 278 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 HBEGFQ99075 208 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 DPYSL5Q9BPU6 564 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SIKE1Q9BRV8 207 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 TRIM55Q9BYV6 548 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 NUF2Q9BZD4 464 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 PITHD1Q9GZP4 211 aaPredicted RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 NT5DC2Q9H857 520 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 C1GALT1Q9NS00 363 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 FARSBQ9NSD9 589 aaKnown RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SOHLH2Q9NX45 425 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 SLC39A1Q9NY26 324 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 ZNF490Q9ULM2 529 aaPredicted RBP8.96□□□□□ -0.98
PHGDH-228ENST00000641847 PCDHGA11Q9Y5H2 935 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 KLK4Q9Y5K2 254 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 DNAJC15Q9Y5T4 150 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 PCM1Q15154 2024 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 PDZD2O15018 2839 aa8.96□□□□□ -0.98
PHGDH-228ENST00000641847 IGHV5-51A0A0C4DH38 117 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 A0A0G2JND7 137 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 A0A0J9YVX5 310 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 TRPC5OSA6NMA1 111 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 ZNF195O14628 629 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 DIAPH2O60879 1101 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 SEMA7AO75326 666 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 ULK1O75385 1050 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 ZBTB11O95625 1053 aaPredicted RBP8.95□□□□□ -0.98
PHGDH-228ENST00000641847 FAM107AO95990 144 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 PDYNP01213 254 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 THRAP10827 490 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 COL8A1P27658 744 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 SERPINB1P30740 379 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 NEK2P51955 445 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 RPS15AP62244 130 aaKnown RBP8.95□□□□□ -0.98
PHGDH-228ENST00000641847 ABRAXAS2Q15018 415 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 IMPG1Q17R60 797 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 CRTC2Q53ET0 693 aaPredicted RBP8.95□□□□□ -0.98
PHGDH-228ENST00000641847 C10orf62Q5T681 223 aaPredicted RBP8.95□□□□□ -0.98
PHGDH-228ENST00000641847 VWA5B1Q5TIE3 1220 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 RNF165Q6ZSG1 346 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 TMPRSS9Q7Z410 1059 aa8.95□□□□□ -0.98
PHGDH-228ENST00000641847 SPATA21Q7Z572 469 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms