RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 IFT88Q13099 833 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 DNASE1L3Q13609 305 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 RCN2Q14257 317 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 HERC3Q15034 1050 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 ARL13AQ5H913 290 aaPredicted RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 CLEC6AQ6EIG7 209 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 PRMT9Q6P2P2 845 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 SCIMPQ6UWF3 145 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 ABHD13Q7L211 337 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 UBE3DQ7Z6J8 389 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 ENDOVQ8N8Q3 282 aaKnown RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 AMER3Q8N944 861 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 OR2L5Q8NG80 312 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 OR5T3Q8NGG3 340 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 SELENOMQ8WWX9 145 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 SREK1Q8WXA9 508 aaKnown RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 GAL3ST3Q96A11 431 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 MVB12AQ96EY5 273 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 CMTM7Q96FZ5 175 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 MAGEB10Q96LZ2 347 aaPredicted RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 DPH2Q9BQC3 489 aaPredicted RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 SLC29A3Q9BZD2 475 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 ELOVL6Q9H5J4 265 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 ZNF395Q9H8N7 513 aaPredicted RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 GPN2Q9H9Y4 310 aaPredicted RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 HCN3Q9P1Z3 774 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 CTSFQ9UBX1 484 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 ADGRE2Q9UHX3 823 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 SNX6Q9UNH7 406 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 FIS1Q9Y3D6 152 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 TMEM233B4DJY2 109 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 C9J4A7 227 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 EFSO43281 561 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 ONECUT2O95948 504 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 SERPINE1P05121 402 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 ENO1P06733 434 aaKnown RBP12.51□□□□□ -0.41
GTF3A-209ENST00000640289 NEFHP12036 1026 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 BTN3A2P78410 334 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 PHEXP78562 749 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 DSG2Q14126 1118 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 DEPDC1Q5TB30 811 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 KHDRBS2Q5VWX1 349 aaKnown RBP12.51□□□□□ -0.41
GTF3A-209ENST00000640289 MRPL14Q6P1L8 145 aaKnown RBP12.51□□□□□ -0.41
GTF3A-209ENST00000640289 TRIM40Q6P9F5 258 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 ABHD17CQ6PCB6 329 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 LRRC69Q6ZNQ3 347 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 KIAA1143Q96AT1 154 aaPredicted RBP12.51□□□□□ -0.41
GTF3A-209ENST00000640289 C17orf62Q9BQA9 187 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 TRMOQ9BU70 441 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 YIPF2Q9BWQ6 316 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 SORBS1Q9BX66 1292 aaKnown RBP12.51□□□□□ -0.41
GTF3A-209ENST00000640289 C20orf27Q9GZN8 174 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 GPN3Q9UHW5 284 aaPredicted RBP12.51□□□□□ -0.41
GTF3A-209ENST00000640289 CDC14AQ9UNH5 594 aa12.51□□□□□ -0.41
GTF3A-209ENST00000640289 FARSAQ9Y285 508 aaKnown RBP12.51□□□□□ -0.41
GTF3A-209ENST00000640289 SPTBP11277 2137 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 H0YIG0 161 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 FOXE1O00358 373 aaPredicted RBP12.5□□□□□ -0.41
GTF3A-209ENST00000640289 PLPP1O14494 284 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 ULK1O75385 1050 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 CRCPO75575 148 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 KRT6AP02538 564 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 KRT6BP04259 564 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 RAB40ALP0C0E4 278 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 PIM1P11309 404 aaPredicted RBP12.5□□□□□ -0.41
GTF3A-209ENST00000640289 CHN1P15882 459 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 SERPINB5P36952 375 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 KRT6CP48668 564 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 PPP2R2AP63151 447 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 TLE3Q04726 772 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 ABRAXAS2Q15018 415 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 NCF4Q15080 339 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 NKG7Q16617 165 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 VWA2Q5GFL6 755 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 ZNF793Q6ZN11 406 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 SHISA6Q6ZSJ9 500 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 CHSY3Q70JA7 882 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 OVCH1Q7RTY7 1134 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 AGR3Q8TD06 166 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 FAR2Q96K12 515 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 QRFPRQ96P65 431 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 CCNL2Q96S94 520 aaPredicted RBP12.5□□□□□ -0.41
GTF3A-209ENST00000640289 ACTL8Q9H568 366 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 SOX17Q9H6I2 414 aaPredicted RBP12.5□□□□□ -0.41
GTF3A-209ENST00000640289 PRDM7Q9NQW5 492 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 TRPC4Q9UBN4 977 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 SSUH2Q9Y2M2 353 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 MAP4K5Q9Y4K4 846 aa12.5□□□□□ -0.41
GTF3A-209ENST00000640289 MDC1Q14676 2089 aaKnown RBP12.5□□□□□ -0.41
GTF3A-209ENST00000640289 A0A087WV48 116 aa12.49□□□□□ -0.41
GTF3A-209ENST00000640289 SRRM3A6NNA2 597 aaPredicted RBP12.49□□□□□ -0.41
GTF3A-209ENST00000640289 TMEM114B3SHH9 223 aa12.49□□□□□ -0.41
GTF3A-209ENST00000640289 C21orf140B9A014 251 aa12.49□□□□□ -0.41
GTF3A-209ENST00000640289 H3BQF6 201 aa12.49□□□□□ -0.41
GTF3A-209ENST00000640289 AZIN1O14977 448 aa12.49□□□□□ -0.41
GTF3A-209ENST00000640289 ATP8B1O43520 1251 aa12.49□□□□□ -0.41
GTF3A-209ENST00000640289 CHST10O43529 356 aa12.49□□□□□ -0.41
GTF3A-209ENST00000640289 JRKO75564 520 aa12.49□□□□□ -0.41
GTF3A-209ENST00000640289 KLF7O75840 302 aaPredicted RBP12.49□□□□□ -0.41
GTF3A-209ENST00000640289 HSPA4LO95757 839 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms