RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SCN3AQ9NY46 2000 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 FOXO6A8MYZ6 492 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 DNAJB6O75190 326 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 SOX11P35716 441 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 DEFB134Q4QY38 66 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 PRR30Q53SZ7 412 aaPredicted RBP18.15■□□□□ 0.5
CLN3-260ENST00000637578 ISLR2Q6UXK2 745 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 ABHD13Q7L211 337 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 IQCKQ8N0W5 287 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 PLPP5Q8NEB5 264 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 OR5T3Q8NGG3 340 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 STAG3L4Q8TBR4 150 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 METTL21AQ8WXB1 218 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 WDR34Q96EX3 536 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 SEC16BQ96JE7 1060 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 TUBB6Q9BUF5 446 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 AICDAQ9GZX7 198 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 NT5DC2Q9H857 520 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 NMRAL1Q9HBL8 299 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 DNAJC11Q9NVH1 559 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 FLNCQ14315 2725 aa18.15■□□□□ 0.5
CLN3-260ENST00000637578 SHANK1Q9Y566 2161 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 OR2W5A6NFC9 320 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 PRAMEF4O60810 478 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 H2AFYO75367 372 aaKnown RBP18.14■□□□□ 0.49
CLN3-260ENST00000637578 STK16O75716 305 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 ZNF888P0CJ79 500 aaPredicted RBP18.14■□□□□ 0.49
CLN3-260ENST00000637578 ICAM2P13598 275 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 TFEBP19484 476 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 SKP1P63208 163 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 RHAGQ02094 409 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 ZNF844Q08AG5 666 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 MFAP5Q13361 173 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 RBBP5Q15291 538 aaKnown RBP18.14■□□□□ 0.49
CLN3-260ENST00000637578 PRAMEF9Q5VWM5 478 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 CPEB2Q7Z5Q1 589 aaKnown RBP18.14■□□□□ 0.49
CLN3-260ENST00000637578 CUZD1Q86UP6 607 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 CNPY4Q8N129 248 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 PLD6Q8N2A8 252 aaKnown RBP18.14■□□□□ 0.49
CLN3-260ENST00000637578 EFCAB3Q8N7B9 438 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 TTLQ8NG68 377 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 ATOH8Q96SQ7 321 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 BARD1Q99728 777 aaKnown RBP18.14■□□□□ 0.49
CLN3-260ENST00000637578 TMEM109Q9BVC6 243 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 ROPN1BQ9BZX4 212 aaPredicted RBP18.14■□□□□ 0.49
CLN3-260ENST00000637578 KLHL31Q9H511 634 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 ROPN1Q9HAT0 212 aaPredicted RBP18.14■□□□□ 0.49
CLN3-260ENST00000637578 WWOXQ9NZC7 414 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 RNF112Q9ULX5 631 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 PCDHGA10Q9Y5H3 936 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 CSAG2Q9Y5P2 127 aa18.14■□□□□ 0.49
CLN3-260ENST00000637578 URADA6NGE7 173 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 ZNF860A6NHJ4 632 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 CHST10O43529 356 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 KLHL2O95198 593 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 B3GALT4O96024 378 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 SERPIND1P05546 499 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 H2AFXP16104 143 aaPredicted RBP18.13■□□□□ 0.49
CLN3-260ENST00000637578 KRT15P19012 456 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 GSTM2P28161 218 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 HSPA7P48741 367 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 AGTR2P50052 363 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 E2F2Q14209 437 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 FAM83EQ2M2I3 478 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 MINDY4Q4G0A6 757 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 TMIGD1Q6UXZ0 262 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 LANCL3Q6ZV70 420 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 ANKRD37Q7Z713 158 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 RIBC1Q8N443 379 aaPredicted RBP18.13■□□□□ 0.49
CLN3-260ENST00000637578 SNRNP40Q96DI7 357 aaKnown RBP18.13■□□□□ 0.49
CLN3-260ENST00000637578 PEX11GQ96HA9 241 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 ZIM3Q96PE6 472 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 ILKAPQ9H0C8 392 aaPredicted RBP18.13■□□□□ 0.49
CLN3-260ENST00000637578 EPS8L2Q9H6S3 715 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 ALG9Q9H6U8 611 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 CD274Q9NZQ7 290 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 CNTRLQ7Z7A1 2325 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 A0A1W2PPM1 405 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 CCDC189A1A4V9 331 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 GOLGA8RI6L899 631 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 VPS4BO75351 444 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 CELA2AP08217 269 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 EPORP19235 508 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 GLRBP48167 497 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 AP2B1P63010 937 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 SRSF1Q07955 248 aaKnown RBP eCLIP18.13■□□□□ 0.49
CLN3-260ENST00000637578 PCDH1Q08174 1060 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 SLBPQ14493 270 aaKnown RBP eCLIP18.13■□□□□ 0.49
CLN3-260ENST00000637578 FBXO48Q5FWF7 155 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.13■□□□□ 0.49
CLN3-260ENST00000637578 BRIX1Q8TDN6 353 aaKnown RBP18.13■□□□□ 0.49
CLN3-260ENST00000637578 ESAMQ96AP7 390 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 TBC1D20Q96BZ9 403 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 ZBTB9Q96C00 473 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 GPR78Q96P69 363 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 ZNF358Q9NW07 568 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 C19orf25Q9UFG5 118 aaPredicted RBP18.13■□□□□ 0.49
CLN3-260ENST00000637578 LGALS13Q9UHV8 139 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 VPS4AQ9UN37 437 aa18.13■□□□□ 0.49
CLN3-260ENST00000637578 ASB1Q9Y576 335 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms