RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TMPRSS11BQ86T26 416 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 PLD3Q8IV08 490 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 CCDC103Q8IW40 242 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 OXR1Q8N573 874 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 KLHL23Q8NBE8 558 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 GGHQ92820 318 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 ZHX1-C8orf76Q96EF9 292 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 SLC35A5Q9BS91 424 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 DSN1Q9H410 356 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 MYNNQ9NPC7 610 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 DMRT3Q9NQL9 472 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 C1GALT1Q9NS00 363 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 GULP1Q9UBP9 304 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 IL36AQ9UHA7 158 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 RAPGEFL1Q9UHV5 662 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 A3GALT2U3KPV4 340 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 TMEM247A6NEH6 219 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 ADAM23O75077 832 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 MOSPD3O75425 235 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 FGF18O76093 207 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 KLHL18O94889 574 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 C6orf47O95873 294 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 ITGA2P17301 1181 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 SLC19A1P41440 591 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 TBPL1P62380 186 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 SLBPQ14493 270 aaKnown RBP eCLIP12.25□□□□□ -0.45
LINC00540-203ENST00000631321 MPEG1Q2M385 716 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 PRSS36Q5K4E3 855 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 DENND6BQ8NEG7 585 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 OR4K1Q8NGD4 311 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 AP2M1Q96CW1 435 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 DEFB118Q96PH6 123 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF226Q9NYT6 803 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 MARK1Q9P0L2 795 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 SPASTQ9UBP0 616 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF451Q9Y4E5 1061 aa12.25□□□□□ -0.45
LINC00540-203ENST00000631321 H3BM21 787 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 PSMD11O00231 422 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 CCL16O15467 120 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 LILRB5O75023 590 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 C1GALT1C1LP0DN25 315 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 SYN1P17600 705 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 C21orf33P30042 268 aaPredicted RBP12.24□□□□□ -0.45
LINC00540-203ENST00000631321 LIMS1P48059 325 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 HMGA2P52926 109 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 PPP5CP53041 499 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 PCBP3P57721 371 aaKnown RBP12.24□□□□□ -0.45
LINC00540-203ENST00000631321 ARHGEF6Q15052 776 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF630Q2M218 657 aaPredicted RBP12.24□□□□□ -0.45
LINC00540-203ENST00000631321 FBXO43Q4G163 708 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 LY6G5CQ5SRR4 150 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 CATSPEREQ5SY80 951 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 SLC46A3Q7Z3Q1 461 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 DEPDC4Q8N2C3 294 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 C16orf78Q8WTQ4 265 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 CYB5D2Q8WUJ1 264 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 PROX1Q92786 737 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 MTERF3Q96E29 417 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 TCEAL4Q96EI5 215 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 DCSTAMPQ9H295 470 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 LINC00597Q9H2U6 94 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 MMP27Q9H306 513 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 RLIMQ9NVW2 624 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 HCFC1R1Q9NWW0 138 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 LTBP2Q14767 1821 aa12.24□□□□□ -0.45
LINC00540-203ENST00000631321 OPN1SWP03999 348 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 ADH1AP07327 375 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 ELFN1P0C7U0 828 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 XPAP23025 273 aaPredicted RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 CD40LGP29965 261 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 CA8P35219 290 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 CTSKP43235 329 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 XCR1P46094 333 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 LIMK1P53667 647 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 SPIBQ01892 262 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 IRF3Q14653 427 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF77Q15935 545 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TIGD6Q17RP2 521 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 EXOC3L2Q2M3D2 409 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 AGAP7PQ5VUJ5 663 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TRIM40Q6P9F5 258 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TUBA3EQ6PEY2 450 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 PLEKHG7Q6ZR37 379 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 PAGE2Q7Z2X7 111 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 ZNF605Q86T29 641 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TRIM74Q86UV6 250 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TRIM73Q86UV7 250 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 LACC1Q8IV20 430 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 LRRC56Q8IYG6 542 aaPredicted RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 LGI4Q8N135 537 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 METTL4Q8N3J2 472 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 NFKBIDQ8NI38 313 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 GEMIN6Q8WXD5 167 aaKnown RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 SORCS1Q8WY21 1168 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 PPCDCQ96CD2 204 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 NXF2Q9GZY0 626 aaKnown RBP12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TDP1Q9NUW8 608 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TBC1D14Q9P2M4 693 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 SH2B3Q9UQQ2 575 aa12.23□□□□□ -0.45
LINC00540-203ENST00000631321 TSC22D4Q9Y3Q8 395 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms