RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 SHKBP1Q8TBC3 707 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 C7orf50Q9BRJ6 194 aaKnown RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 OR51I1Q9H343 314 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 TRAV19A0A0A6YYK7 116 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 A0A1W2PQL4 384 aaPredicted RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 KRT33AO76009 404 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 SMIM10L2AP0DMW4 78 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 SMIM10L2BP0DMW5 78 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 EFNA1P20827 205 aaPredicted RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 CRHBPP24387 322 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 ADORA2AP29274 412 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 LAPTM4AQ15012 233 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 CLEC12AQ5QGZ9 265 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 PIM3Q86V86 326 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 OR6C4Q8NGE1 309 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 PEX13Q92968 403 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 FCRL3Q96P31 734 aaPredicted RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 MKKSQ9NPJ1 570 aaPredicted RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 MRPL17Q9NRX2 175 aaKnown RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 SLC2A6Q9UGQ3 507 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 MRPS33Q9Y291 106 aaKnown RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 SLC27A6Q9Y2P4 619 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 RBM7Q9Y580 266 aaKnown RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 KRBOX1C9JBD0 128 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 SORBS2O94875 1100 aaKnown RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 KDELR2P33947 212 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 LRP10Q7Z4F1 713 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 TMEM135Q86UB9 458 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 PARP16Q8N5Y8 322 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 ZNF366Q8N895 744 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 OR13C4Q8NGS5 318 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 RTP4Q96DX8 246 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 CNTNAP3BQ96NU0 1288 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 FN3KQ9H479 309 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 NEUROD4Q9HD90 331 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 BORCS7-ASMTA0A0B4J1R7 106 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 SMIM35A0A1B0GVV1 85 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 ZNF705EA8MWA4 302 aaPredicted RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 HAS3O00219 553 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 CDC7O00311 574 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 PI15O43692 258 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 NIPSNAP2O75323 286 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 NUDT7P0C024 238 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 SLC35E2BP0CK96 405 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 HDCP19113 662 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 KCNA5P22460 613 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 SPCS2Q15005 226 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 TMED4Q7Z7H5 227 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 TWNKQ96RR1 684 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 GPR20Q99678 358 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 CD244Q9BZW8 370 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 RETREG1Q9H6L5 497 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 BEX1Q9HBH7 125 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 ZBTB20Q9HC78 741 aaPredicted RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 MYNNQ9NPC7 610 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 SH2B3Q9UQQ2 575 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 ERVK-19Q9WJR5 959 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 KCNIP3Q9Y2W7 256 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 NAP1L6A6NFF2 107 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 LOC730098B7Z3J9 87 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 CDK14O94921 469 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 ALX3O95076 343 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 EPHX2P34913 555 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 CRY2Q49AN0 593 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 ACDQ96AP0 544 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 PEBP4Q96S96 227 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 MMP28Q9H239 520 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 TAS2R8Q9NYW2 309 aa8.62□□□□□ -1.03
VCL-206ENST00000623461 ZFR2Q9UPR6 939 aaKnown RBP8.62□□□□□ -1.03
VCL-206ENST00000623461 ANKRD34BA5PLL1 514 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 KAT7O95251 611 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 BCHEP06276 602 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 ELFN1P0C7U0 828 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 GMPRP36959 345 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 GNALP38405 381 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 PPIGQ13427 754 aaKnown RBP eCLIP8.61□□□□□ -1.03
VCL-206ENST00000623461 ABCA11PQ4W5N1 156 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 RNF130Q86XS8 419 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 CFAP52Q8N1V2 620 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 OR8K3Q8NH51 312 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 TSGA13Q96PP4 275 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 ADAM2Q99965 735 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 RNF19AQ9NV58 838 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 IL37Q9NZH6 218 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 ABCD2Q9UBJ2 740 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 USP54Q70EL1 1684 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 C13orf42A0A1B0GVH6 325 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 G3V2L1 256 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 FUT4P22083 530 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 PRAMEF13Q5VWM6 474 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 REEP3Q6NUK4 255 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 C3P1Q6ZMU1 363 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 TPGS1Q6ZTW0 290 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 ADGRG5Q8IZF4 528 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 HS3ST5Q8IZT8 346 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 CLEC4CQ8WTT0 213 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 ARL11Q969Q4 196 aa8.61□□□□□ -1.03
VCL-206ENST00000623461 GJD4Q96KN9 370 aaPredicted RBP8.61□□□□□ -1.03
VCL-206ENST00000623461 P2RX7Q99572 595 aaKnown RBP8.61□□□□□ -1.03
VCL-206ENST00000623461 ACOT13Q9NPJ3 140 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms