RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 STMN3Q9NZ72 180 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 GULP1Q9UBP9 304 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 E7EQ34 232 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 UGT2B17O75795 530 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 SLC10A3P09131 477 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 ADORA3P0DMS8 318 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 AMD1P17707 334 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 TNFSF8P32971 234 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 DDI2Q5TDH0 399 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 CAPN13Q6MZZ7 669 aaPredicted RBP12.13□□□□□ -0.47
LIG1-221ENST00000613670 CBLL1Q75N03 491 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 SERPINA11Q86U17 422 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 ZNF366Q8N895 744 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 OR2AP1Q8NGE2 309 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 GEMIN6Q8WXD5 167 aaKnown RBP12.13□□□□□ -0.47
LIG1-221ENST00000613670 C1QTNF3Q9BXJ4 246 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 CAPN10Q9HC96 672 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 CCDC177Q9NQR7 707 aaPredicted RBP12.13□□□□□ -0.47
LIG1-221ENST00000613670 FBXO8Q9NRD0 319 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 RLIMQ9NVW2 624 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 KIAA1522Q9P206 1035 aaPredicted RBP12.13□□□□□ -0.47
LIG1-221ENST00000613670 B4GALT6Q9UBX8 382 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 WDR81Q562E7 1941 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 ADAM12O43184 909 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 SEPT4O43236 478 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 KLK8O60259 260 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 ATP1B2P14415 290 aaPredicted RBP12.12□□□□□ -0.47
LIG1-221ENST00000613670 ITGA1P56199 1179 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 NFE2L1Q14494 772 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 LEXMQ3ZCV2 418 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 SNAP47Q5SQN1 464 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 C22orf42Q6IC83 251 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 TPRG1Q6ZUI0 275 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 Q6ZVU0 165 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 DNAJC22Q8N4W6 341 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 GPR151Q8TDV0 419 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 FOXJ1Q92949 421 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 ISG20Q96AZ6 181 aaKnown RBP12.12□□□□□ -0.47
LIG1-221ENST00000613670 YIPF6Q96EC8 236 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 P2RY13Q9BPV8 354 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 SLIRPQ9GZT3 109 aaKnown RBP12.12□□□□□ -0.47
LIG1-221ENST00000613670 ZC4H2Q9NQZ6 224 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 ZNF222Q9UK12 451 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 NPIPB15A6NHN6 443 aaPredicted RBP12.12□□□□□ -0.47
LIG1-221ENST00000613670 PCDH17O14917 1159 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 PCMT1P22061 227 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 NRIP1P48552 1158 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 ST8SIA6P61647 398 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 SNRPD2P62316 118 aaKnown RBP12.12□□□□□ -0.47
LIG1-221ENST00000613670 MC1RQ01726 317 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 RGNQ15493 299 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 SPHARQ15513 63 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 CLEC12AQ5QGZ9 265 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 ERAP2Q6P179 960 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 TMEM220Q6QAJ8 160 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 CEACAM20Q6UY09 585 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 DNAJB7Q7Z6W7 309 aaPredicted RBP12.12□□□□□ -0.47
LIG1-221ENST00000613670 ZFP41Q8N8Y5 198 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 NIPSNAP1Q9BPW8 284 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 WRAP53Q9BUR4 548 aaKnown RBP12.12□□□□□ -0.47
LIG1-221ENST00000613670 OSGEPL1Q9H4B0 414 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 MRPL17Q9NRX2 175 aaKnown RBP12.12□□□□□ -0.47
LIG1-221ENST00000613670 AHSPQ9NZD4 102 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 SPG21Q9NZD8 308 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 PTGFRNQ9P2B2 879 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 ASF1AQ9Y294 204 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 NUMA1Q14980 2115 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 PRR23AA6NEV1 266 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 NEDD8-MDP1E9PL57 170 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 FAM227AF5H4B4 570 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 WWP2O00308 870 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 YES1P07947 543 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 PTNP21246 168 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 CSTF2P33240 577 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIG1-221ENST00000613670 NKX3-2P78367 333 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 ZSWIM7Q19AV6 140 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 GDPD3Q7L5L3 318 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 TRIM46Q7Z4K8 759 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 YIPF4Q9BSR8 244 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 CLCA2Q9UQC9 943 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 Q9Y3F1 56 aa12.12□□□□□ -0.47
LIG1-221ENST00000613670 CNTRLQ7Z7A1 2325 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 GABRR3A8MPY1 467 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 PRKAR1AP10644 381 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 CKBP12277 381 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 JUPP14923 745 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 AP1S2P56377 157 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 PTGES3Q15185 160 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 TCEA2Q15560 299 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 TBCEQ15813 527 aaPredicted RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 UGT8Q16880 541 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 LRIT3Q3SXY7 679 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 LUZP2Q86TE4 346 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 PDLIM5Q96HC4 596 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 BBS4Q96RK4 519 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 RIOK2Q9BVS4 552 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 OR2B2Q9GZK3 357 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 SIRT5Q9NXA8 310 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 ING3Q9NXR8 418 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 DKK3Q9UBP4 350 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms