RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 MS4A8Q9BY19 250 aa24.39■■□□□ 1.49
TRIM28-204ENST00000594806 ROGDIQ9GZN7 287 aa24.39■■□□□ 1.49
TRIM28-204ENST00000594806 KLHL31Q9H511 634 aa24.39■■□□□ 1.49
TRIM28-204ENST00000594806 SOX17Q9H6I2 414 aaPredicted RBP24.39■■□□□ 1.49
TRIM28-204ENST00000594806 PPT2Q9UMR5 302 aa24.39■■□□□ 1.49
TRIM28-204ENST00000594806 RNF11Q9Y3C5 154 aa24.39■■□□□ 1.49
TRIM28-204ENST00000594806 PEX12O00623 359 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 CTIFO43310 598 aaKnown RBP24.38■■□□□ 1.49
TRIM28-204ENST00000594806 BMP10O95393 424 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 MLYCDO95822 493 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 CPA3P15088 417 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 OTX2P32243 289 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 ARFIP1P53367 373 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 RRADP55042 308 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 DNAJB13P59910 316 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 SNRPNP63162 240 aaKnown RBP24.38■■□□□ 1.49
TRIM28-204ENST00000594806 TRAF3Q13114 568 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 RBBP7Q16576 425 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 CPSF6Q16630 551 aaKnown RBP eCLIP24.38■■□□□ 1.49
TRIM28-204ENST00000594806 UNC50Q53HI1 259 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 CEP85LQ5SZL2 805 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 FAM69BQ5VUD6 431 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 TMEM102Q8N9M5 508 aaPredicted RBP24.38■■□□□ 1.49
TRIM28-204ENST00000594806 CCDC63Q8NA47 563 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 TMEM237Q96Q45 408 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 ARHGAP9Q9BRR9 750 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 CENPKQ9BS16 269 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 CRB3Q9BUF7 120 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 NPLQ9BXD5 320 aaPredicted RBP24.38■■□□□ 1.49
TRIM28-204ENST00000594806 KCNMB2Q9Y691 235 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 CACNA1GO43497 2377 aa24.38■■□□□ 1.49
TRIM28-204ENST00000594806 H3BQF6 201 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 FOXE1O00358 373 aaPredicted RBP24.37■■□□□ 1.49
TRIM28-204ENST00000594806 ERI3O43414 337 aaKnown RBP24.37■■□□□ 1.49
TRIM28-204ENST00000594806 RDH16O75452 317 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 TBX6O95947 436 aaPredicted RBP24.37■■□□□ 1.49
TRIM28-204ENST00000594806 HNRNPH1P31943 449 aaKnown RBP24.37■■□□□ 1.49
TRIM28-204ENST00000594806 RAB8AP61006 207 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 MAT1AQ00266 395 aaKnown RBP24.37■■□□□ 1.49
TRIM28-204ENST00000594806 MED25Q71SY5 747 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 ZC3H7AQ8IWR0 971 aaKnown RBP24.37■■□□□ 1.49
TRIM28-204ENST00000594806 HUS1BQ8NHY5 278 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 EXTL1Q92935 676 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 FER1L6-AS2Q96M78 137 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 KCNC2Q96PR1 638 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 AICDAQ9GZX7 198 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 PRM3Q9NNZ6 103 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 C3orf18Q9UK00 162 aa24.37■■□□□ 1.49
TRIM28-204ENST00000594806 FAM208BQ5VWN6 2430 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 SFTPCP11686 197 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 PTX3P26022 381 aaPredicted RBP24.36■■□□□ 1.49
TRIM28-204ENST00000594806 XCR1P46094 333 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 EMP2P54851 167 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 CDH13P55290 713 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 ASPHQ12797 758 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 ZRSR2Q15696 482 aaKnown RBP24.36■■□□□ 1.49
TRIM28-204ENST00000594806 SYT16Q17RD7 645 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 ABHD17CQ6PCB6 329 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 MRGPREQ86SM8 312 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 OR4F6Q8NGB9 312 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 WDR20Q8TBZ3 569 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 PGM2Q96G03 612 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 ZNF382Q96SR6 550 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 TBCDQ9BTW9 1192 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 ADNPQ9H2P0 1102 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 SSU72Q9NP77 194 aaKnown RBP24.36■■□□□ 1.49
TRIM28-204ENST00000594806 OXSMQ9NWU1 459 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 HCN3Q9P1Z3 774 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 TRPS1Q9UHF7 1281 aa24.36■■□□□ 1.49
TRIM28-204ENST00000594806 MGAQ8IWI9 3026 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 CHST10O43529 356 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 HEXBP07686 556 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 MYZAPP0CAP1 466 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 TSFMP43897 325 aaKnown RBP24.35■■□□□ 1.49
TRIM28-204ENST00000594806 BTN3A2P78410 334 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 LCP2Q13094 533 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 LINC00303Q3SY05 128 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 TNFAIP8L3Q5GJ75 292 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 DEPDC1Q5TB30 811 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 FRG2Q64ET8 278 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 ADNP2Q6IQ32 1131 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 PPP1R32Q7Z5V6 425 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 ADAMTS18Q8TE60 1221 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 TRPC4APQ8TEL6 797 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 CDK15Q96Q40 435 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 FRG2BQ96QU4 278 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 SERINC2Q96SA4 455 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 STMN4Q9H169 189 aaPredicted RBP24.35■■□□□ 1.49
TRIM28-204ENST00000594806 DMRT3Q9NQL9 472 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 TUBD1Q9UJT1 453 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 ACTL7BQ9Y614 415 aa24.35■■□□□ 1.49
TRIM28-204ENST00000594806 IDSB3KWA1 339 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 AGPSO00116 658 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 ATXN7O15265 892 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-204ENST00000594806 B3GALT2O43825 422 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 JAK1P23458 1154 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 PLA2G16P53816 162 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 MTTPP55157 894 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 PKNOX1P55347 436 aa24.34■■□□□ 1.49
TRIM28-204ENST00000594806 IFT88Q13099 833 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms