RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TEFMQ96QE5 360 aaKnown RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 C1QTNF1Q9BXJ1 281 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 LRRC3Q9BY71 257 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 CD248Q9HCU0 757 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 C12orf4Q9NQ89 552 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 AP4S1Q9Y587 144 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 ARHGEF15O94989 841 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 IL7RP16871 459 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 ID2Q02363 134 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 LIPEQ05469 1076 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 SLAMF1Q13291 335 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 PCBP2Q15366 365 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIG3-216ENST00000593099 GLYATQ6IB77 296 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 METTL2BQ6P1Q9 378 aaKnown RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 RNF44Q7L0R7 432 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 C1orf210Q8IVY1 113 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 CADM2Q8N3J6 435 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 OR56A1Q8NGH5 318 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 BTBD9Q96Q07 612 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 EBF4Q9BQW3 602 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 C9orf16Q9BUW7 83 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 DEFB126Q9BYW3 111 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 FAM120CQ9NX05 1096 aaKnown RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 ZSCAN32Q9NX65 697 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 POM121BA6NF01 834 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 FOXD2O60548 495 aaPredicted RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 MFN2O95140 757 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 C1orf105O95561 183 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 C8orf89P0DMQ9 161 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 IL1RNP18510 177 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 TIA1P31483 386 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIG3-216ENST00000593099 OR4D2P58180 307 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 NOXRED1Q6NXP6 359 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 CCDC103Q8IW40 242 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 PGAM4Q8N0Y7 254 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 HUS1BQ8NHY5 278 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 VANGL1Q8TAA9 524 aaPredicted RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 ASB11Q8WXH4 323 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 TBC1D10AQ9BXI6 508 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 IGSF5Q9NSI5 407 aa9.45□□□□□ -0.9
LIG3-216ENST00000593099 WSB2Q9NYS7 404 aaPredicted RBP9.45□□□□□ -0.9
LIG3-216ENST00000593099 PRORSD1PA6NEY8 169 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 LRRC14BA6NHZ5 514 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PDYNP01213 254 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 MMP2P08253 660 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 FGF3P11487 239 aaPredicted RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 IMPDH2P12268 514 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 GSTM2P28161 218 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 XKP51811 444 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PPP2CBP62714 309 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PPP2CAP67775 309 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 MTAPQ13126 283 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 TUBB3Q13509 450 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 FGL2Q14314 439 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 BCL7AQ4VC05 210 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 RUNDC3AQ59EK9 446 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 POMZP3Q6PJE2 187 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 KRT74Q7RTS7 529 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 ETFBKMTQ8IXQ9 262 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 SLC22A15Q8IZD6 547 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 DNAJC9Q8WXX5 260 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 CNDP2Q96KP4 475 aaKnown RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 MUC13Q9H3R2 512 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 REEP4Q9H6H4 257 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 ZNF395Q9H8N7 513 aaPredicted RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 ALKBH4Q9NXW9 302 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PRODH2Q9UF12 536 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PISDQ9UG56 409 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 RPH3AQ9Y2J0 694 aaPredicted RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 PRSS51A0A1B0GVH4 220 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 DHRS12A0PJE2 317 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 GLOD5A6NK44 160 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 OR10H3O60404 316 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 MOSPD3O75425 235 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 FHP07954 510 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 ZNF806P0C7X5 589 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 G6PDP11413 515 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 E2F1Q01094 437 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 SPIBQ01892 262 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 DECR1Q16698 335 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 CTSL3PQ5NE16 218 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PIP5KL1Q5T9C9 394 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 CDHR3Q6ZTQ4 885 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 MCATQ8IVS2 390 aaKnown RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 KLHDC8AQ8IYD2 350 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 RSPRY1Q96DX4 576 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PDXPQ96GD0 296 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 PDLIM5Q96HC4 596 aaKnown RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 OR52B2Q96RD2 323 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 SLC35A5Q9BS91 424 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 ARRDC1-AS1Q9H2J1 176 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 TM7SF3Q9NS93 570 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 SAMHD1Q9Y3Z3 626 aaKnown RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 AP1M2Q9Y6Q5 423 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 OTOFQ9HC10 1997 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 C1orf226A1L170 272 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 A6NCN8 305 aa9.44□□□□□ -0.9
LIG3-216ENST00000593099 CDC123O75794 336 aaPredicted RBP9.44□□□□□ -0.9
LIG3-216ENST00000593099 SCELO95171 688 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms