RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CCDC189A1A4V9 331 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 C4orf51C9J302 202 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 POC1B-GALNT4F8VUJ3 575 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 SEC24DO94855 1032 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-206ENST00000579558 UQCRHP07919 91 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 CELA2AP08217 269 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 RHOXF2BP0C7M4 288 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 ICAM2P13598 275 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 MTHFD2P13995 350 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 EPORP19235 508 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 JAK1P23458 1154 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 MSH2P43246 934 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 RHAGQ02094 409 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 CHIT1Q13231 466 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 LAPTM5Q13571 262 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 INPP5JQ15735 1006 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-206ENST00000579558 PRR30Q53SZ7 412 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-206ENST00000579558 PAGE2BQ5JRK9 111 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 LINC00696Q6ZRV3 163 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 RIPOR1Q6ZS17 1223 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 Q6ZS92 163 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 ANKRD37Q7Z713 158 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 BRIX1Q8TDN6 353 aaKnown RBP22.52■■□□□ 1.2
SHMT1-206ENST00000579558 PPP4R1Q8TF05 950 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 GAL3ST3Q96A11 431 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 IMMP1LQ96LU5 166 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 RHOXF2Q9BQY4 288 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 CLK4Q9HAZ1 481 aaKnown RBP22.52■■□□□ 1.2
SHMT1-206ENST00000579558 PTGFRNQ9P2B2 879 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 MAP10Q9P2G4 905 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 CSAG2Q9Y5P2 127 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 K7EPI3 171 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 CLEC3AO75596 197 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 WFS1O76024 890 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 CD22P20273 847 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 HNRNPH1P31943 449 aaKnown RBP22.51■■□□□ 1.19
SHMT1-206ENST00000579558 AP2B1P63010 937 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 BTN3A2P78410 334 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 MFAP5Q13361 173 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 ABRAXAS2Q15018 415 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 NSDHLQ15738 373 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 HIST2H2ACQ16777 129 aaPredicted RBP22.51■■□□□ 1.19
SHMT1-206ENST00000579558 CRB2Q5IJ48 1285 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 HIST2H2AA3Q6FI13 130 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 IQCKQ8N0W5 287 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 SIRT6Q8N6T7 355 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 PLPP5Q8NEB5 264 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 PSMF1Q92530 271 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 FAR2Q96K12 515 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 LMF1Q96S06 567 aa22.51■■□□□ 1.19
SHMT1-206ENST00000579558 ZNF490Q9ULM2 529 aaPredicted RBP22.51■■□□□ 1.19
SHMT1-206ENST00000579558 LRIT2A6NDA9 550 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 MAGEB17A8MXT2 336 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 PSMD12O00232 456 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-206ENST00000579558 ERI3O43414 337 aaKnown RBP22.5■■□□□ 1.19
SHMT1-206ENST00000579558 B4GALT2O60909 372 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 KRT38O76015 456 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 ITGAMP11215 1152 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 RNH1P13489 461 aaKnown RBP22.5■■□□□ 1.19
SHMT1-206ENST00000579558 GFAPP14136 432 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 HPDP32754 393 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-206ENST00000579558 TBCCQ15814 346 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 ADNP2Q6IQ32 1131 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 VN1R5Q7Z5H4 357 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 DNAJB14Q8TBM8 379 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 TSLPQ969D9 159 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 ISL2Q96A47 359 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 MS4A6EQ96DS6 147 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 GPR78Q96P69 363 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 RHBGQ9H310 441 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 PRM3Q9NNZ6 103 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 UBR5O95071 2799 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-206ENST00000579558 SPENQ96T58 3664 aaKnown RBP22.5■■□□□ 1.19
SHMT1-206ENST00000579558 SCN2AQ99250 2005 aa22.5■■□□□ 1.19
SHMT1-206ENST00000579558 A0A0G2JN53 185 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 VPS4BO75351 444 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 CNTFP26441 200 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 SOX11P35716 441 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 CASP2P42575 452 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 MAGEA12P43365 314 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 SETDB1Q15047 1291 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 PFKFB4Q16877 469 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 BTBD16Q32M84 506 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 SFT2D3Q587I9 215 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 CUZD1Q86UP6 607 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 CA13Q8N1Q1 262 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 PLD6Q8N2A8 252 aaKnown RBP22.49■■□□□ 1.19
SHMT1-206ENST00000579558 AMER2Q8N7J2 671 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 DCAKDQ8WVC6 231 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 CNDP1Q96KN2 507 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 REXO4Q9GZR2 422 aaKnown RBP22.49■■□□□ 1.19
SHMT1-206ENST00000579558 CPSF2Q9P2I0 782 aaKnown RBP22.49■■□□□ 1.19
SHMT1-206ENST00000579558 ZNF180Q9UJW8 692 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 VPS4AQ9UN37 437 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 ANGPTL3Q9Y5C1 460 aa22.49■■□□□ 1.19
SHMT1-206ENST00000579558 A0A088AWK7 358 aa22.48■■□□□ 1.19
SHMT1-206ENST00000579558 EXOC1LA0A1B0GW35 172 aa22.48■■□□□ 1.19
SHMT1-206ENST00000579558 EPB42P16452 691 aa22.48■■□□□ 1.19
SHMT1-206ENST00000579558 ZNF10P21506 573 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-206ENST00000579558 ALDH18A1P54886 795 aaKnown RBP22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms