RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 UBTD2Q8WUN7 234 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 PSMF1Q92530 271 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 PTCD3Q96EY7 689 aaKnown RBP14.18□□□□□ -0.14
VPS39-210ENST00000568357 RBCK1Q9BYM8 510 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 PITHD1Q9GZP4 211 aaPredicted RBP14.18□□□□□ -0.14
VPS39-210ENST00000568357 LHPPQ9H008 270 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 ZNF700Q9H0M5 742 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 LUZP4Q9P127 313 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 ZNF180Q9UJW8 692 aa14.18□□□□□ -0.14
VPS39-210ENST00000568357 ANKRD17O75179 2603 aaKnown RBP14.18□□□□□ -0.14
VPS39-210ENST00000568357 TNRC6AQ8NDV7 1962 aaKnown RBP14.18□□□□□ -0.14
VPS39-210ENST00000568357 CCDC189A1A4V9 331 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 URADA6NGE7 173 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 LRRC14BA6NHZ5 514 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 TTLL8A6PVC2 850 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 SYCE1LA8MT33 242 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 TRIM49D1C9J1S8 452 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 K7EPI3 171 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 PCDH17O14917 1159 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 RIPK2O43353 540 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 KLK8O60259 260 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 CLEC3AO75596 197 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 CDC123O75794 336 aaPredicted RBP14.17□□□□□ -0.14
VPS39-210ENST00000568357 KRT38O76015 456 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 SORBS2O94875 1100 aaKnown RBP14.17□□□□□ -0.14
VPS39-210ENST00000568357 CELA2AP08217 269 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 ABHD2P08910 425 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 MYBL2P10244 700 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 HNRNPH1P31943 449 aaKnown RBP14.17□□□□□ -0.14
VPS39-210ENST00000568357 CASP2P42575 452 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 RHAGQ02094 409 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 IRF8Q02556 426 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 E2F2Q14209 437 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 TBCCQ15814 346 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 PLEKHN1Q494U1 663 aaPredicted RBP14.17□□□□□ -0.14
VPS39-210ENST00000568357 AGAP7PQ5VUJ5 663 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 SLC6A19Q695T7 634 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 KLC3Q6P597 504 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 KBTBD2Q8IY47 623 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 GSPT2Q8IYD1 628 aaKnown RBP14.17□□□□□ -0.14
VPS39-210ENST00000568357 Q8NA96 180 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 TTLQ8NG68 377 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 METTL21AQ8WXB1 218 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 CCT6BQ92526 530 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 TBC1D20Q96BZ9 403 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 MS4A6EQ96DS6 147 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 IMMP1LQ96LU5 166 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 AGAP4Q96P64 663 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 OR1F2PQ96R84 312 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 EPB41L4BQ9H329 900 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 OPTCQ9UBM4 332 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 PLAAQ9Y263 795 aa14.17□□□□□ -0.14
VPS39-210ENST00000568357 A0A0G2JN53 185 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 EXOC1LA0A1B0GW35 172 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 ANKDD1BA6NHY2 528 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 FAM227AF5H4B4 570 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 KLHL41O60662 606 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 FHP07954 510 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 PRR35P0CG20 571 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 IL10P22301 178 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 ALDH18A1P54886 795 aaKnown RBP14.16□□□□□ -0.14
VPS39-210ENST00000568357 BTN3A2P78410 334 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 PCDH1Q08174 1060 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 LAPTM5Q13571 262 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 SLC29A2Q14542 456 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 SETDB1Q15047 1291 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 TECRLQ5HYJ1 363 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 NIPAL1Q6NVV3 410 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 IGFL2Q6UWQ7 119 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 CPEB2Q7Z5Q1 589 aaKnown RBP14.16□□□□□ -0.14
VPS39-210ENST00000568357 ANKRD37Q7Z713 158 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 TEX9Q8N6V9 391 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 PLPP5Q8NEB5 264 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 PNPLA2Q96AD5 504 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 SEC16BQ96JE7 1060 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 EFCAB11Q9BUY7 163 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 RHBGQ9H310 441 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 CLK4Q9HAZ1 481 aaKnown RBP14.16□□□□□ -0.14
VPS39-210ENST00000568357 ICE1Q9Y2F5 2266 aa14.16□□□□□ -0.14
VPS39-210ENST00000568357 NBASA2RRP1 2371 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 ERI3O43414 337 aaKnown RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 B4GALT2O60909 372 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 SEC24DO94855 1032 aaPredicted RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 SIX3O95343 332 aaPredicted RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 SERPINA7P05543 415 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 CYC1P08574 325 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 SNRPAP09012 282 aaKnown RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 GFAPP14136 432 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 EPB42P16452 691 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 CNTFP26441 200 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 GSTM2P28161 218 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 STXBP1P61764 594 aaKnown RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 SKP1P63208 163 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 BTG2P78543 158 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 RUNX2Q13950 521 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 NAA30Q147X3 362 aaPredicted RBP14.15□□□□□ -0.14
VPS39-210ENST00000568357 ABRAXAS2Q15018 415 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 PCBP2Q15366 365 aaKnown RBP eCLIP14.15□□□□□ -0.14
VPS39-210ENST00000568357 NSDHLQ15738 373 aa14.15□□□□□ -0.14
VPS39-210ENST00000568357 HIST2H2ACQ16777 129 aaPredicted RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms