RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MEP1AQ16819 746 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 ABHD11Q8NFV4 315 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 SGCDQ92629 289 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 MTERF3Q96E29 417 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 TPD52L3Q96J77 140 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 C7orf34Q96L11 122 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 INSM2Q96T92 566 aaPredicted RBP19.4■□□□□ 0.7
CLN3-230ENST00000568076 TRMT61BQ9BVS5 477 aaKnown RBP19.4■□□□□ 0.7
CLN3-230ENST00000568076 ASPSCR1Q9BZE9 553 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 SLC6A17Q9H1V8 727 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 POLR1BQ9H9Y6 1135 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 DDX18Q9NVP1 670 aaKnown RBP19.4■□□□□ 0.7
CLN3-230ENST00000568076 CRHBPP24387 322 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 TEAD1P28347 426 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 HSD17B2P37059 387 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 CD47Q08722 323 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 ZC3H12BQ5HYM0 836 aaKnown RBP19.39■□□□□ 0.7
CLN3-230ENST00000568076 DEPDC1Q5TB30 811 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 ZNF776Q68DI1 518 aaPredicted RBP19.39■□□□□ 0.7
CLN3-230ENST00000568076 ZNF773Q6PK81 442 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 PIWIL3Q7Z3Z3 882 aaKnown RBP19.39■□□□□ 0.7
CLN3-230ENST00000568076 CLVS1Q8IUQ0 354 aaPredicted RBP19.39■□□□□ 0.7
CLN3-230ENST00000568076 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.39■□□□□ 0.7
CLN3-230ENST00000568076 ADGRF3Q8IZF5 1079 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 C11orf65Q8NCR3 313 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 OR52N2Q8NGI0 321 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 OR5AK3PQ8NH89 298 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 SMPDL3AQ92484 453 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 F2RL3Q96RI0 385 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 SLC6A16Q9GZN6 736 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 SPATA7Q9P0W8 599 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 TAAR2Q9P1P5 351 aa19.39■□□□□ 0.7
CLN3-230ENST00000568076 ANKDD1BA6NHY2 528 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 GPR89AB7ZAQ6 455 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 H7BY64 318 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 SLC16A6O15403 523 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 TRMUO75648 421 aaKnown RBP19.39■□□□□ 0.69
CLN3-230ENST00000568076 GPR89BP0CG08 455 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 FPR1P21462 350 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 IGFBP5P24593 272 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 DNAJA1P31689 397 aaKnown RBP19.39■□□□□ 0.69
CLN3-230ENST00000568076 SH3BGRP55822 239 aaPredicted RBP19.39■□□□□ 0.69
CLN3-230ENST00000568076 ISL1P61371 349 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 DMPKQ09013 629 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 RAB39AQ14964 217 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 NUMA1Q14980 2115 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 RBM48Q5RL73 367 aaKnown RBP19.39■□□□□ 0.69
CLN3-230ENST00000568076 ZNF691Q5VV52 312 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 KHDRBS2Q5VWX1 349 aaKnown RBP19.39■□□□□ 0.69
CLN3-230ENST00000568076 FAM180BQ6P0A1 224 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 IKBIPQ70UQ0 350 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 GALNT5Q7Z7M9 940 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 MRPL38Q96DV4 380 aaKnown RBP19.39■□□□□ 0.69
CLN3-230ENST00000568076 C12orf66Q96MD2 445 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 PRAP1Q96NZ9 151 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 AIF1LQ9BQI0 150 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 C1QTNF2Q9BXJ5 285 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 MS4A8Q9BY19 250 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 TAS2R9Q9NYW1 312 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 EBF1Q9UH73 591 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 ACSL5Q9ULC5 683 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 CDC14AQ9UNH5 594 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 KCNK6Q9Y257 313 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 PLEKHM1Q9Y4G2 1056 aa19.39■□□□□ 0.69
CLN3-230ENST00000568076 CCR8P51685 355 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 RAD23AP54725 363 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 ITGA1P56199 1179 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 REEP5Q00765 189 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 SLC5A12Q1EHB4 618 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 RFX4Q33E94 735 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 ATAT1Q5SQI0 421 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 C6orf141Q5SZD1 244 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 KDM4DQ6B0I6 523 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 TSEN54Q7Z6J9 526 aaKnown RBP19.38■□□□□ 0.69
CLN3-230ENST00000568076 HDAC2Q92769 488 aaKnown RBP19.38■□□□□ 0.69
CLN3-230ENST00000568076 ISOC1Q96CN7 298 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 ADNPQ9H2P0 1102 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 OSGEPL1Q9H4B0 414 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 PHPT1Q9NRX4 125 aaPredicted RBP19.38■□□□□ 0.69
CLN3-230ENST00000568076 C1GALT1Q9NS00 363 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 EXD2Q9NVH0 621 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 FBXL12Q9NXK8 326 aa19.38■□□□□ 0.69
CLN3-230ENST00000568076 A0A1W2PRB8 838 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 SUV39H1O43463 412 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 CEACAM5P06731 702 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 ITGAMP11215 1152 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 AGXTP21549 392 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 EEF1B2P24534 225 aaKnown RBP19.37■□□□□ 0.69
CLN3-230ENST00000568076 BSGP35613 385 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 TPD52P55327 224 aaPredicted RBP19.37■□□□□ 0.69
CLN3-230ENST00000568076 TEAD4Q15561 434 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 TMEM259Q4ZIN3 620 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 HORMAD1Q86X24 394 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 PIK3C3Q8NEB9 887 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 FERD3LQ96RJ6 166 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 CXorf21Q9HAI6 301 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 BAG5Q9UL15 447 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 SAMHD1Q9Y3Z3 626 aaKnown RBP19.37■□□□□ 0.69
CLN3-230ENST00000568076 ATG2BQ96BY7 2078 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 A0A1W2PQU0 124 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms