RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 H0YIV9 168 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 SAP18O00422 153 aaKnown RBP18.51■□□□□ 0.55
CLN3-225ENST00000566824 UGDHO60701 494 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 ETHE1O95571 254 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 MYZAPP0CAP1 466 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 AVPR1BP47901 424 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 ZC3H7AQ8IWR0 971 aaKnown RBP18.51■□□□□ 0.55
CLN3-225ENST00000566824 STT3BQ8TCJ2 826 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 SNRNP27Q8WVK2 155 aaKnown RBP18.51■□□□□ 0.55
CLN3-225ENST00000566824 ARL8AQ96BM9 186 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 QRFPRQ96P65 431 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 EFHD1Q9BUP0 239 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 YIPF2Q9BWQ6 316 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 GATA5Q9BWX5 397 aaPredicted RBP18.51■□□□□ 0.55
CLN3-225ENST00000566824 OR51B5Q9H339 312 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 DMRT3Q9NQL9 472 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 MED13Q9UHV7 2174 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 IGLV3-12A0A075B6K2 115 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 CDC14CA4D256 554 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 OR2W5A6NFC9 320 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 MAGEB17A8MXT2 336 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 H0YIG0 161 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 RTCAO00442 366 aaKnown RBP18.5■□□□□ 0.55
CLN3-225ENST00000566824 ERI3O43414 337 aaKnown RBP18.5■□□□□ 0.55
CLN3-225ENST00000566824 PLA2G16P53816 162 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 RPS13P62277 151 aaKnown RBP18.5■□□□□ 0.55
CLN3-225ENST00000566824 BTN3A2P78410 334 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 CDC20Q12834 499 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 SGO1Q5FBB7 561 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 LIPMQ5VYY2 423 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 CES4AQ5XG92 561 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 ATG14Q6ZNE5 492 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 FRMD7Q6ZUT3 714 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 OR2Y1Q8NGV0 311 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 ADAMTS17Q8TE56 1095 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 UBE2E3Q969T4 207 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 GAL3ST3Q96A11 431 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 TLCD1Q96CP7 247 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 CCDC126Q96EE4 140 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 PKNOX2Q96KN3 472 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 KCNA7Q96RP8 456 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 ZNF382Q96SR6 550 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 C17orf62Q9BQA9 187 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 SORBS1Q9BX66 1292 aaKnown RBP18.5■□□□□ 0.55
CLN3-225ENST00000566824 SHCBP1LQ9BZQ2 653 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 PCDHGA11Q9Y5H2 935 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 IGSF10Q6WRI0 2623 aa18.5■□□□□ 0.55
CLN3-225ENST00000566824 SASH3O75995 380 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 OTCP00480 354 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ALBP02768 609 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ZGLP1P0C6A0 271 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 PIM1P11309 404 aaPredicted RBP18.49■□□□□ 0.55
CLN3-225ENST00000566824 GSTM2P28161 218 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 STXBP1P61764 594 aaKnown RBP18.49■□□□□ 0.55
CLN3-225ENST00000566824 KLC1Q07866 573 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 LCP2Q13094 533 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 RUNX2Q13950 521 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 HERC3Q15034 1050 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 GGTA1PQ4G0N0 100 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ABHD17CQ6PCB6 329 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ZCCHC23Q6ZST2 131 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 GPRIN3Q6ZVF9 776 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ABHD13Q7L211 337 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 CROCCP2Q86T23 111 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 CDYL2Q8N8U2 506 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 OR2L5Q8NG80 312 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 OR51Q1Q8NH59 317 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 AGAP11Q8TF27 550 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 SEC16BQ96JE7 1060 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 RBCK1Q9BYM8 510 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 REXO4Q9GZR2 422 aaKnown RBP18.49■□□□□ 0.55
CLN3-225ENST00000566824 WDR54Q9H977 334 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 SSU72Q9NP77 194 aaKnown RBP18.49■□□□□ 0.55
CLN3-225ENST00000566824 PRDM7Q9NQW5 492 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ZNF282Q9UDV7 671 aaPredicted RBP18.49■□□□□ 0.55
CLN3-225ENST00000566824 TRPS1Q9UHF7 1281 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 TSC22D4Q9Y3Q8 395 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 MAP4K5Q9Y4K4 846 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 CHD6Q8TD26 2715 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 MASP2O00187 686 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 CHST10O43529 356 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ARRB2P32121 409 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 OTX2P32243 289 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 FOLR3P41439 243 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 PIK3CBP42338 1070 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 HTR6P50406 440 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 FOXA1P55317 472 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 MAGOHP61326 146 aaKnown RBP18.49■□□□□ 0.55
CLN3-225ENST00000566824 UGT8Q16880 541 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 DEPDC1Q5TB30 811 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 KHDRBS2Q5VWX1 349 aaKnown RBP18.49■□□□□ 0.55
CLN3-225ENST00000566824 FRG2Q64ET8 278 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ZNF793Q6ZN11 406 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 PPP1R32Q7Z5V6 425 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 AMER2Q8N7J2 671 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ZSCAN1Q8NBB4 408 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 PEX11GQ96HA9 241 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 FRG2BQ96QU4 278 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 HBEGFQ99075 208 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 MLXIPLQ9NP71 852 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms